Factsheet for Solyc03g061590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g067490.2.1
Solyc02g062680.2.1
Solyc02g079050.2.1
Solyc03g061590.2.1
Solyc03g095780.1.1
Solyc03g113740.2.1
Solyc04g011510.2.1
Solyc05g007750.2.1
Solyc05g052420.1.1
Solyc06g043150.2.1
Solyc06g050500.2.1
Solyc07g054690.1.1
Solyc08g005420.2.1
Solyc08g067190.2.1
Solyc08g080080.2.1
Solyc10g080400.1.1
Solyc12g014320.1.1
Solyc12g056490.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20000.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT2G20000.1	Solyc12g014320.1.1	AT1G78770.1	20706207
AT2G20000.1	Solyc05g007750.2.1	AT2G04660.1	17944809
AT2G20000.1	Solyc02g062680.2.1	AT2G18290.1	17944809
AT2G20000.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT2G20000.1	Solyc01g067490.2.1	AT2G39090.1	20706207
AT2G20000.1	Solyc03g095780.1.1	AT2G40330.1	17944809
AT2G20000.1	Solyc05g052420.1.1	AT2G40330.1	17944809
AT2G20000.1	Solyc06g050500.2.1	AT2G40330.1	17944809
AT2G20000.1	Solyc10g080400.1.1	AT2G42260.1	20706207
AT2G20000.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT2G20000.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT2G20000.1	Solyc04g011510.2.1	AT3G55440.1	20706207
AT2G20000.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT2G20000.1	Solyc08g080080.2.1	AT4G22910.1	17944809
AT2G20000.1	Solyc12g056490.1.1	AT4G22910.1	17944809
AT2G20000.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT2G20000.1	Solyc08g005420.2.1	AT4G33270.1	17944809
AT2G20000.1	Solyc06g043150.2.1	AT5G13840.1	17944809
AT2G20000.1	Solyc08g005420.2.1	AT5G26900.1	17944809
AT2G20000.1	Solyc08g005420.2.1	AT5G27570.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41728	Soybean	extracellular, vacuole	20.44	78.72
CDY35918	Canola	cytosol	59.67	43.55
VIT_11s0016g03260.t01	Wine grape	cytosol	67.96	16.16
AT2G20000.1	Thale cress	cytosol	65.75	15.99
Bra039034.1-P	Field mustard	cytosol	65.19	15.88
GSMUA_Achr1P19740_001	Banana	cytosol	60.77	14.63
Zm00001d042523_P001	Maize	cytosol	60.22	14.51
KXG33895	Sorghum	cytosol	59.67	14.32
TraesCS7A01G398600.1	Wheat	cytosol	59.67	14.25
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	56.35	14.13
TraesCS7D01G392900.2	Wheat	cytosol	59.12	14.12
HORVU7Hr1G093620.9	Barley	cytosol	48.62	11.69
Solyc03g113740.2.1	Tomato	cytosol, mitochondrion	12.71	3.99
Solyc03g061600.2.1	Tomato	endoplasmic reticulum	12.15	3.38
Os06t0622500-00	Rice	cytosol	4.97	2.37

Protein Annotations

EnsemblPlants:Solyc03g061590.2.1	EnsemblPlantsGene:Solyc03g061590.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR011990	InterPro:IPR019734	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	PANTHER:PTHR12558	PANTHER:PTHR12558:SF13	PFAM:PF12895	PFscan:PS50005	SUPFAM:SSF48452
TMHMM:TMhelix	UniParc:UPI00027690BD	UniProt:K4BH07	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:+:30443451..30451520

Molecular Weight (calculated)

20391.9 Da

IEP (calculated)

6.971

GRAVY (calculated)

0.216

Length

181 amino acids

Sequence
(BLAST)

001: METLLTESVQ NSLGHFMYHN AIFMCERLCA EFPSETNTQL LAGCYLHNQQ AYAAYHLLKG TSMAQSRYLF ALSCFHMGLL TEAETALCPP NEPTAEVPNG
101: AAGHYLLGLI YRYTDRRNSS IHHFNQALLL NPLLWAAYEE LCILGLCQNN LSKHLRSIAI YCCVLIFVIA TTLIINFVPK K

Best Arabidopsis Sequence Match ( AT2G20000.1 )
(BLAST)

001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP

Arabidopsis Description

CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.