Factsheet for Solyc04g011510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071330	Potato	cytosol, extracellular	89.96	91.73
AT3G55440.1	Thale cress	cytosol	82.24	83.86
CDX76094	Canola	cytosol	82.24	83.86
CDY02939	Canola	cytosol	81.85	83.79
Bra014743.1-P	Field mustard	cytosol	81.85	83.46
CDY02937	Canola	cytosol	81.85	83.46
CDX76095	Canola	cytosol	81.47	83.07
Bra014744.1-P	Field mustard	cytosol	81.08	82.68
GSMUA_Achr11P...	Banana	plasma membrane	79.92	81.5
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	79.92	81.5
GSMUA_Achr5P28700_001	Banana	cytosol	79.15	80.71
Solyc06g005490.2.1	Tomato	plastid	77.22	77.82
TraesCS3D01G073000.1	Wheat	golgi	74.9	76.68
Os01t0841600-01	Rice	cytosol	73.36	74.51
Zm00001d012407_P004	Maize	cytosol	73.36	74.22
KXG33676	Sorghum	cytosol, plastid	72.97	73.83
TraesCS3A01G359400.1	Wheat	golgi	71.81	72.66
TraesCS3B01G392000.1	Wheat	cytosol	67.95	71.26
CDY40220	Canola	cytosol	55.21	64.13
HORVU3Hr1G013350.1	Barley	extracellular, plastid	74.52	63.28
GSMUA_AchrUn_...	Banana	cytosol	55.98	62.5
Zm00001d009835_P001	Maize	cytosol	30.12	60.0
Bra007163.1-P	Field mustard	cytosol	42.47	57.29
Bra003214.1-P	Field mustard	cytosol	39.38	50.75
CDY53690	Canola	cytosol	39.38	50.75
CDY41233	Canola	cytosol, extracellular	32.05	48.54
Solyc10g054870.1.1	Tomato	plastid	54.05	44.87
Solyc01g111120.2.1	Tomato	plastid	54.83	43.56
Zm00001d029307_P001	Maize	cytosol	27.41	41.28

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005886
GO:GO:0005975	GO:GO:0006091	GO:GO:0006094	GO:GO:0006096	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009506	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009735
GO:GO:0009987	GO:GO:0010043	GO:GO:0016020	GO:GO:0019563	GO:GO:0030312	GO:GO:0044262
GO:GO:0046166	GO:GO:0046686	GO:GO:0048046	InterPro:IPR000652	InterPro:IPR013785	UniProt:K4BPK4
HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF16
SUPFAM:SSF51351	EnsemblPlantsGene:Solyc04g011510.2	EnsemblPlants:Solyc04g011510.2.1	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk
InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0002765FE6	SEG:seg	:	:

Description

Triosephosphate isomerase, cytosolic [Source:Projected from Arabidopsis thaliana (AT3G55440) UniProtKB/Swiss-Prot;Acc:P48491]

Coordinates

chr4:+:3944572..3949105

Molecular Weight (calculated)

27506.0 Da

IEP (calculated)

5.365

GRAVY (calculated)

0.120

Length

259 amino acids

Sequence
(BLAST)

001: MRSYAGHDDL ALIMNAMQNG TSEEIKKIVA TLNAGQVPSQ DVVEVVVSPP FVFLPLVKSE LRSDFHVAAQ NCWVKNGGAF TGEVSANMLV NLSIPWVILG
101: HSERRAILGE SNEFVGDKVA YALSQGLKVI ACVGETLEQR ESGSTMAVVA AQTKAIADRV KDWSNVVIAY EPVWAIGTGK VATPAQAQEV HAELRKWLQA
201: NVSAEVAAST RIIYGGSVSG ANCKELAGQP DVDGFLVGGA SLKPEFIDII KAAEVKKSA

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.