Factsheet for Solyc06g005490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04800.t01	Wine grape	cytosol	85.6	86.61
GSMUA_Achr5P28700_001	Banana	cytosol	82.1	83.07
Zm00001d012407_P004	Maize	cytosol	81.71	82.03
Os01t0841600-01	Rice	cytosol	81.32	81.96
GSMUA_Achr11P...	Banana	plasma membrane	80.54	81.5
KRH10260	Soybean	nucleus	80.16	81.42
KRH23071	Soybean	cytosol, nucleus	66.93	81.13
KXG33676	Sorghum	cytosol, plastid	80.54	80.86
TraesCS3A01G359400.1	Wheat	golgi	80.54	80.86
TraesCS3B01G392000.1	Wheat	cytosol	76.65	79.76
Solyc04g011510.2.1	Tomato	plastid	77.82	77.22
TraesCS3D01G073000.1	Wheat	golgi	75.49	76.68
HORVU3Hr1G013350.1	Barley	extracellular, plastid	75.49	63.61
GSMUA_AchrUn_...	Banana	cytosol	56.81	62.93
Zm00001d009835_P001	Maize	cytosol	31.13	61.54
Solyc10g054870.1.1	Tomato	plastid	56.03	46.15
Solyc01g111120.2.1	Tomato	plastid	56.42	44.48
Zm00001d029307_P001	Maize	cytosol	28.4	42.44

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006091
GO:GO:0006094	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0019563	GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785
UniProt:K4C331	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139
PANTHER:PTHR21139:SF9	SUPFAM:SSF51351	EnsemblPlantsGene:Solyc06g005490.2	EnsemblPlants:Solyc06g005490.2.1	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0002765B3B	:	:

Description

No Description!

Coordinates

chr6:+:504176..510469

Molecular Weight (calculated)

27665.5 Da

IEP (calculated)

7.964

GRAVY (calculated)

0.182

Length

257 amino acids

Sequence
(BLAST)

001: MARKFFVGGN WKCNGTVEEV KKIVTTLSKA EVPSEDVVEV VISPPFVFLP LVKTLLRRDF SIAAQNCWVR KGGAFTGEVS AEMLVNLGIP WVILGHSERR
101: LLLNESNDFV AGKVAYALSQ GLKVIACVGE TLEQRESGST MVVVAAQTKA IAEQVTHWSN IVLAYEPVWA IGTGKVATPA QAQQVHFELR KWLHVNVGAE
201: VAASTRIIYG GSVNGANCKE LAAQPDVDGF LVGGASLKPE FIDIIKSATV KTTAKSE

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.