Factsheet for Solyc10g054870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011335	Potato	plastid	93.59	91.54
Solyc01g111120.2.1	Tomato	plastid	84.62	80.98
Bra030316.1-P	Field mustard	plastid	79.49	79.49
CDY15911	Canola	plastid	79.49	79.49
CDX99612	Canola	plastid	79.17	79.17
KRH32560	Soybean	nucleus, plastid	76.6	78.62
KRH67765	Soybean	extracellular, nucleus, plastid	77.24	77.99
KRG96044	Soybean	nucleus	76.92	77.67
CDY13836	Canola	plastid	79.49	77.5
AT2G21170.3	Thale cress	plastid	78.21	77.46
KRH19958	Soybean	plastid	75.64	77.38
Bra031167.1-P	Field mustard	plastid	79.17	77.19
CDX82002	Canola	plastid	78.85	76.88
VIT_03s0038g01780.t01	Wine grape	plastid	79.17	76.23
GSMUA_Achr9P24140_001	Banana	plastid	71.79	73.93
TraesCS5D01G331100.1	Wheat	plastid	70.83	73.91
TraesCS5B01G324800.1	Wheat	plastid	70.83	73.91
Zm00001d006221_P001	Maize	plastid	70.51	73.83
TraesCS5A01G324200.1	Wheat	plastid	71.15	73.75
HORVU5Hr1G082630.5	Barley	plastid	71.15	73.51
Zm00001d021310_P001	Maize	extracellular	71.15	73.03
Os09t0535000-02	Rice	extracellular	71.15	73.03
EER99254	Sorghum	plastid	70.83	72.7
GSMUA_Achr3P26710_001	Banana	plastid	71.47	71.7
Solyc06g005490.2.1	Tomato	plastid	46.15	56.03
Solyc04g011510.2.1	Tomato	plastid	44.87	54.05

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	MapMan:3.12.3
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006091
GO:GO:0006094	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0019563	GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785
UniProt:K4D180	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139
PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	EnsemblPlantsGene:Solyc10g054870.1	EnsemblPlants:Solyc10g054870.1.1	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0002769313	:	:

Description

No Description!

Coordinates

chr10:-:56032416..56038129

Molecular Weight (calculated)

33285.4 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.124

Length

312 amino acids

Sequence
(BLAST)

001: MATSLASQLS GPKSAIAFST PPHFSGLRPS SNFKLDNTRS FFQNVDSHKG CRPVVSMAGS GKFFVGGNWK CNGTKDSISK LVSDLNSAKL ESDVDVVVAP
101: PFMYIDQVKS SLTDRIEISG QNCWTGKGGA FTGEISVEQL KDIGCKWVIL GHSERRHVIG ENDEFIGKKA AYALSQNVGV IACIGELLEE REAGKTFDVC
201: FNQLKAFADA LPSWDDVVIA YEPVWAIGTG KVASPEQAQE VHAAVRDWLS KNVSAEVASK TRIIYGGSVN GGNSSDLAKK EDIDGFLVGG ASLKGPEFAT
301: IINSVTSKKV AA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.