Factsheet for GSMUA_Achr9P24140_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P26710_001	Banana	plastid	88.12	85.85
TraesCS5B01G324800.1	Wheat	plastid	75.91	76.92
TraesCS5D01G331100.1	Wheat	plastid	75.58	76.59
Zm00001d006221_P001	Maize	plastid	74.92	76.17
Os09t0535000-02	Rice	extracellular	76.24	75.99
TraesCS5A01G324200.1	Wheat	plastid	75.25	75.75
HORVU5Hr1G082630.5	Barley	plastid	75.25	75.5
EER99254	Sorghum	plastid	75.58	75.33
Zm00001d021310_P001	Maize	extracellular	74.59	74.34
KRH67765	Soybean	extracellular, nucleus, plastid	75.58	74.11
KRG96044	Soybean	nucleus	74.92	73.46
CDY15911	Canola	plastid	75.58	73.4
CDX99612	Canola	plastid	75.58	73.4
Bra030316.1-P	Field mustard	plastid	75.25	73.08
KRH32560	Soybean	nucleus, plastid	72.94	72.7
KRH19958	Soybean	plastid	72.94	72.46
VIT_03s0038g01780.t01	Wine grape	plastid	76.9	71.91
Solyc10g054870.1.1	Tomato	plastid	73.93	71.79
CDY13836	Canola	plastid	75.25	71.25
Bra031167.1-P	Field mustard	plastid	74.92	70.94
CDX82002	Canola	plastid	74.59	70.62
AT2G21170.3	Thale cress	plastid	73.27	70.48
PGSC0003DMT400011335	Potato	plastid	73.27	69.59
Solyc01g111120.2.1	Tomato	plastid	72.61	67.48
PGSC0003DMT400004042	Potato	cytosol, plastid	72.61	67.48
GSMUA_Achr11P...	Banana	plasma membrane	52.15	62.2
GSMUA_Achr5P28700_001	Banana	cytosol	51.82	61.81
GSMUA_Achr9P03330_001	Banana	cytosol	51.82	59.92
GSMUA_AchrUn_...	Banana	cytosol	35.31	46.12

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	MapMan:3.12.3
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G24140_001	EnsemblPlants:GSMUA_Achr9P24140_001	EnsemblPlants:GSMUA_Achr9T24140_001	InterPro:IPR000652
InterPro:IPR013785	UniProt:M0U321	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk
InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0002953134	:	:	:

Description

Triosephosphate isomerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G24140_001]

Coordinates

chr9:-:28955852..28967121

Molecular Weight (calculated)

32765.2 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.007

Length

303 amino acids

Sequence
(BLAST)

001: MNWFSANVTI TAITCRIAAP STALFLRSVH SRIRLPASCR PPRGVVAMAG TGKFFVGGNW KCNGTRDSIT KLVADLNDAK LETDVDIVVA PPYIYIDQVK
101: QSLTDRIEIS AQNSWIGKGG AFTGEISAEQ LVDIGCKWVI LGHSERRHVI GEDDQFIGKK AAYALSQNLK VIACIGEKLE EREAGKTFDV CFQQMKAFAD
201: SISNWTDVVI AYEPVWAIGT GKVATPQQAQ EVHLAVRDWL KKNVSAEVAS STRIIYGGSV NGNNCSELAK QEDIDGFLVG GASLKGPEFA IIVNSVTSKK
301: VAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.