Factsheet for PGSC0003DMT400004042

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111120.2.1	Tomato	plastid	97.85	97.85
PGSC0003DMT400011335	Potato	plastid	84.66	86.52
KRH32560	Soybean	nucleus, plastid	76.38	81.91
KRH19958	Soybean	plastid	75.77	80.98
KRH67765	Soybean	extracellular, nucleus, plastid	76.38	80.58
KRG96044	Soybean	nucleus	75.46	79.61
Bra030316.1-P	Field mustard	plastid	74.85	78.21
CDY15911	Canola	plastid	74.85	78.21
CDX99612	Canola	plastid	74.85	78.21
AT2G21170.3	Thale cress	plastid	75.15	77.78
VIT_03s0038g01780.t01	Wine grape	plastid	77.3	77.78
CDY13836	Canola	plastid	75.15	76.56
Bra031167.1-P	Field mustard	plastid	74.85	76.25
CDX82002	Canola	plastid	74.54	75.94
TraesCS5A01G324200.1	Wheat	plastid	68.71	74.42
TraesCS5D01G331100.1	Wheat	plastid	68.1	74.25
TraesCS5B01G324800.1	Wheat	plastid	67.79	73.91
Zm00001d006221_P001	Maize	plastid	67.48	73.83
HORVU5Hr1G082630.5	Barley	plastid	68.1	73.51
Os09t0535000-02	Rice	extracellular	67.79	72.7
GSMUA_Achr9P24140_001	Banana	plastid	67.48	72.61
Zm00001d021310_P001	Maize	extracellular	67.18	72.04
EER99254	Sorghum	plastid	67.18	72.04
GSMUA_Achr3P26710_001	Banana	plastid	68.71	72.03
PGSC0003DMT400071330	Potato	cytosol, extracellular	46.32	59.45

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:102583463
MapMan:3.12.3	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000652	InterPro:IPR013785	UniProt:M0ZMS6
HAMAP:MF_00147_B	PFAM:PF00121	EnsemblPlantsGene:PGSC0003DMG400001595	PGSC:PGSC0003DMG400001595	EnsemblPlants:PGSC0003DMT400004042	ScanProsite:PS00171
PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI00029492CD	RefSeq:XP_006359648.1	:

Description

Triosephosphate isomerase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400001595]

Coordinates

chr1:-:87179147..87185680

Molecular Weight (calculated)

34670.0 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.052

Length

326 amino acids

Sequence
(BLAST)

001: MAVASTSLAS QMSGPKSATS ISCPQFSGLR KSFSKLDNSV SFSTSQAFFQ TVDSHLRLSA DRKGCRAVVA MAGSGKFFVG GNWKCNGTKD SISKLVSDLN
101: NAQLESDVDV VVAPPFLYID QVKNSLTDRI EVSAQNCWTG KGGAFTGEIS VEQVKDLGCK WVILGHSERR HVIGENDEFI GKKAAYALSQ GVGVIACIGE
201: LLQEREAGKT FDVCFQQLKA FADAIPSWDN VVIAYEPVWA IGTGKVASPE QAQEVHVAVR DWLTKNVSAE VASKTRIIYG GSVNGSNSSD LAKKEDIDGF
301: LVGGASLKGP EFATIVNSVT AKKVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.