Factsheet for PGSC0003DMT400011335

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g054870.1.1	Tomato	plastid	91.54	93.59
PGSC0003DMT400004042	Potato	cytosol, plastid	86.52	84.66
KRH32560	Soybean	nucleus, plastid	76.8	80.59
KRH19958	Soybean	plastid	76.18	79.67
Bra030316.1-P	Field mustard	plastid	77.12	78.85
CDY15911	Canola	plastid	77.12	78.85
CDX99612	Canola	plastid	77.12	78.85
KRH67765	Soybean	extracellular, nucleus, plastid	76.18	78.64
AT2G21170.3	Thale cress	plastid	77.43	78.41
KRG96044	Soybean	nucleus	75.86	78.32
CDY13836	Canola	plastid	78.37	78.12
CDX82002	Canola	plastid	77.12	76.88
Bra031167.1-P	Field mustard	plastid	77.12	76.88
VIT_03s0038g01780.t01	Wine grape	plastid	78.06	76.85
TraesCS5D01G331100.1	Wheat	plastid	69.59	74.25
TraesCS5B01G324800.1	Wheat	plastid	69.28	73.91
HORVU5Hr1G082630.5	Barley	plastid	69.91	73.84
TraesCS5A01G324200.1	Wheat	plastid	69.59	73.75
Os09t0535000-02	Rice	extracellular	69.91	73.36
GSMUA_Achr9P24140_001	Banana	plastid	69.59	73.27
Zm00001d006221_P001	Maize	plastid	68.34	73.15
Zm00001d021310_P001	Maize	extracellular	69.28	72.7
EER99254	Sorghum	plastid	68.97	72.37
GSMUA_Achr3P26710_001	Banana	plastid	69.28	71.06
PGSC0003DMT400071330	Potato	cytosol, extracellular	46.71	58.66

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:102601486
MapMan:3.12.3	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000652	InterPro:IPR013785	UniProt:M0ZZE2
HAMAP:MF_00147_B	PFAM:PF00121	EnsemblPlantsGene:PGSC0003DMG400004436	PGSC:PGSC0003DMG400004436	EnsemblPlants:PGSC0003DMT400011335	ScanProsite:PS00171
PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI000295D5F4	RefSeq:XP_006367334.1	:

Description

Triosephosphate isomerase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400004436]

Coordinates

chr10:-:46412633..46419474

Molecular Weight (calculated)

34055.3 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.125

Length

319 amino acids

Sequence
(BLAST)

001: MATSLASQLS GPKSAISFSS PPHFSGLRPS SNFKLDNTHS FFQNVDSHLR LSPSHKACRP VVSMAGSGKF FVGGNWKCNG TKDSISKLVS DLNSAKLESD
101: VDVVVAPPFL YIDQVKSSLT DRIEISGQNC WTGKGGAFTG EISVEQLKDV GCKWVILGHS ERRHVIGEND EFIGKKAAYA LSQNVGVIAC IGELLEEREA
201: GKTFDVCFKQ LKAFADALPS WDDVVIAYEP VWAIGTGKVA SPEQAQEVHA AVRDWLSKNV SAEVASKTRI IYGGSVNGGN SSDLAKKEDI DGFLVGGASL
301: KGPEFATIIN SVTSKKVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.