Factsheet for TraesCS5A01G324200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G324800.1	Wheat	plastid	95.02	95.65
HORVU5Hr1G082630.5	Barley	plastid	94.35	94.04
TraesCS5D01G331100.1	Wheat	plastid	92.03	92.64
Zm00001d006221_P001	Maize	plastid	82.72	83.56
Os09t0535000-02	Rice	extracellular	84.39	83.55
EER99254	Sorghum	plastid	82.06	81.25
Zm00001d021310_P001	Maize	extracellular	81.06	80.26
GSMUA_Achr9P24140_001	Banana	plastid	75.75	75.25
KRH32560	Soybean	nucleus, plastid	73.75	73.03
GSMUA_Achr3P26710_001	Banana	plastid	75.42	72.99
KRH19958	Soybean	plastid	72.43	71.48
Solyc10g054870.1.1	Tomato	plastid	73.75	71.15
CDY15911	Canola	plastid	72.76	70.19
Bra030316.1-P	Field mustard	plastid	72.76	70.19
CDX99612	Canola	plastid	72.76	70.19
KRH67765	Soybean	extracellular, nucleus, plastid	71.76	69.9
KRG96044	Soybean	nucleus	71.76	69.9
PGSC0003DMT400011335	Potato	plastid	73.75	69.59
Solyc01g111120.2.1	Tomato	plastid	74.75	69.02
PGSC0003DMT400004042	Potato	cytosol, plastid	74.42	68.71
VIT_03s0038g01780.t01	Wine grape	plastid	73.75	68.52
CDY13836	Canola	plastid	72.43	68.12
CDX82002	Canola	plastid	72.43	68.12
Bra031167.1-P	Field mustard	plastid	72.43	68.12
AT2G21170.3	Thale cress	plastid	71.1	67.94
TraesCS3A01G073300.1	Wheat	cytosol, unclear	52.49	62.45
TraesCS3A01G359400.1	Wheat	golgi	50.83	59.77

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	MapMan:3.12.3
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807
GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005829	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0006629
GO:GO:0006642	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016043	GO:GO:0019563	GO:GO:0032504	GO:GO:0046166	GO:GO:0048046
GO:GO:0080022	InterPro:IPR000652	InterPro:IPR013785	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171
PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf
EnsemblPlantsGene:TraesCS5A01G324200	EnsemblPlants:TraesCS5A01G324200.1	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	TIGR:cd00311
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:535575304..535579383

Molecular Weight (calculated)

32200.3 Da

IEP (calculated)

7.191

GRAVY (calculated)

-0.061

Length

301 amino acids

Sequence
(BLAST)

001: MAAPSSLASS HLSRLAAAAP APQHHHQNHQ LRLGCSRRRA QRLVAMAGSG KFFVGGNWKC NGTKESISKL VSDLNAATLE SDVDVVVAPP FIYIDQVKSS
101: LTGRIEVSAQ NTWIGKGGAF TGEISAEQLV DIGCQWVILG HSERRHVIGE DDEFIGKKAA YALSQNLKVM ACIGELLEER EAGKTFDVCF KQMKAFADNI
201: TDWTNVVIAY EPVWAIGTGK VASPEQAQEV HAAVRDWLKT NVSADVASTV RIIYGGSVNA ANCAELAKKE DIDGFLVGGA SLKGPDFATI CNSVTSKKVT
301: A

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.