Factsheet for Zm00001d006221_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99254	Sorghum	plastid	90.6	88.82
Zm00001d021310_P001	Maize	extracellular	90.27	88.49
Os09t0535000-02	Rice	extracellular	87.25	85.53
TraesCS5B01G324800.1	Wheat	plastid	83.22	82.94
TraesCS5A01G324200.1	Wheat	plastid	83.56	82.72
TraesCS5D01G331100.1	Wheat	plastid	82.21	81.94
HORVU5Hr1G082630.5	Barley	plastid	82.89	81.79
GSMUA_Achr9P24140_001	Banana	plastid	76.17	74.92
GSMUA_Achr3P26710_001	Banana	plastid	75.5	72.35
KRH32560	Soybean	nucleus, plastid	73.15	71.71
KRH19958	Soybean	plastid	72.82	71.15
KRG96044	Soybean	nucleus	73.49	70.87
Solyc10g054870.1.1	Tomato	plastid	73.83	70.51
KRH67765	Soybean	extracellular, nucleus, plastid	72.15	69.58
CDY15911	Canola	plastid	71.81	68.59
CDX99612	Canola	plastid	71.81	68.59
PGSC0003DMT400011335	Potato	plastid	73.15	68.34
Bra030316.1-P	Field mustard	plastid	71.48	68.27
Solyc01g111120.2.1	Tomato	plastid	74.16	67.79
PGSC0003DMT400004042	Potato	cytosol, plastid	73.83	67.48
VIT_03s0038g01780.t01	Wine grape	plastid	73.15	67.28
AT2G21170.3	Thale cress	plastid	70.47	66.67
CDY13836	Canola	plastid	71.48	66.56
Bra031167.1-P	Field mustard	plastid	71.14	66.25
CDX82002	Canola	plastid	70.81	65.94
Zm00001d040375_P001	Maize	cytosol	24.16	65.45
Zm00001d008619_P001	Maize	plastid	52.01	62.0
Zm00001d039865_P002	Maize	cytosol	53.36	61.39
Zm00001d012407_P004	Maize	cytosol	52.35	60.94
Zm00001d009835_P001	Maize	cytosol	22.48	51.54
Zm00001d029307_P001	Maize	cytosol	20.13	34.88
Zm00001d030216_P001	Maize	mitochondrion	28.19	32.43

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:100193000
MapMan:3.12.3	Gene3D:3.20.20.70	UniProt:A0A1D6ETY2	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824
GO:GO:0004807	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016853	InterPro:IPR000652
InterPro:IPR013785	HAMAP:MF_00147_B	ProteinID:ONM23131.1	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk
InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI000221BA1B	EnsemblPlantsGene:Zm00001d006221	EnsemblPlants:Zm00001d006221_P001	EnsemblPlants:Zm00001d006221_T001
SEG:seg	:	:	:	:	:

Description

triose phosphate isomerase2 triose phosphate isomerase2

Coordinates

chr2:-:202188330..202192176

Molecular Weight (calculated)

31601.8 Da

IEP (calculated)

7.424

GRAVY (calculated)

0.067

Length

298 amino acids

Sequence
(BLAST)

001: MAAAPSSLAS SHLSPIAAVS TPAVPHQLRI GCSRRRAGRI VAMAGSGKFF VGGNWKCNGT KDSISKLVSE LNAATLETDV DVVVAPPFIY IDQVKNSLTG
101: RIEVSAQNVW IGKGGAYTGE ISAEQLVDIG CQWVILGHSE RRHIIGENDE FIGKKAAYAL SQNVKVIACI GELLEEREAG KTFDVCFRQM KAFADSISNW
201: ADVVIAYEPV WAIGTGKVAT PEQAQEVHAA VRNWLKTNIS PDVASSTRII YGGSVNAANC AELAKKEDID GFLVGGASLK GPDFATIINS VTAKKVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.