Factsheet for VIT_03s0038g01780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32560	Soybean	nucleus, plastid	76.23	81.25
KRG96044	Soybean	nucleus	76.85	80.58
KRH67765	Soybean	extracellular, nucleus, plastid	76.54	80.26
KRH19958	Soybean	plastid	74.69	79.34
Solyc10g054870.1.1	Tomato	plastid	76.23	79.17
PGSC0003DMT400011335	Potato	plastid	76.85	78.06
Solyc01g111120.2.1	Tomato	plastid	78.4	77.91
CDX99612	Canola	plastid	75.0	77.88
Bra030316.1-P	Field mustard	plastid	74.69	77.56
CDY15911	Canola	plastid	74.69	77.56
PGSC0003DMT400004042	Potato	cytosol, plastid	77.78	77.3
CDY13836	Canola	plastid	76.23	77.19
GSMUA_Achr9P24140_001	Banana	plastid	71.91	76.9
GSMUA_Achr3P26710_001	Banana	plastid	73.46	76.53
CDX82002	Canola	plastid	75.0	75.94
Bra031167.1-P	Field mustard	plastid	75.0	75.94
AT2G21170.3	Thale cress	plastid	73.46	75.56
TraesCS5D01G331100.1	Wheat	plastid	68.83	74.58
TraesCS5B01G324800.1	Wheat	plastid	68.21	73.91
TraesCS5A01G324200.1	Wheat	plastid	68.52	73.75
Os09t0535000-02	Rice	extracellular	68.83	73.36
HORVU5Hr1G082630.5	Barley	plastid	68.21	73.18
Zm00001d006221_P001	Maize	plastid	67.28	73.15
EER99254	Sorghum	plastid	67.28	71.71
Zm00001d021310_P001	Maize	extracellular	66.05	70.39
VIT_06s0004g04800.t01	Wine grape	cytosol	47.22	60.24
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	46.6	59.45

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:100260576
wikigene:100260576	MapMan:3.12.3	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	ProteinID:CCB60650	ProteinID:CCB60650.1
UniProt:F6I134	EMBL:FN596508	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006091
GO:GO:0006094	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0019563	GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785
EntrezGene:LOC100260576	wikigene:LOC100260576	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGR:TC63131	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0001982F6F	ArrayExpress:VIT_03s0038g01780	EnsemblPlantsGene:VIT_03s0038g01780
EnsemblPlants:VIT_03s0038g01780.t01	unigene:Vvi.6915	RefSeq:XP_002274871	RefSeq:XP_002274871.1	RefSeq:XP_003631576	RefSeq:XP_003631576.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:1238202..1248527

Molecular Weight (calculated)

34677.2 Da

IEP (calculated)

8.112

GRAVY (calculated)

-0.076

Length

324 amino acids

Sequence
(BLAST)

001: MAAVTSTSLA SQLSTPKATT PSYSYSSATQ FSGLRRSFSN LDHSPQPFFS SNLRISSSPR KPCRGIVAMA GSGKFFVGGN WKCNGTKDSI SKLVSDLNSA
101: KLEADVDVVV APPFVYLDQV KNSLTDRIEI SAQNSWVGKG GAFTGEISVE QLKDIGCNWV ILGHSERRHV IGEDDQFIGK KAAYALSQGL KVIACIGELL
201: QEREAGKTFD VCFQQMKAFA DAVPSWDDVV IAYEPVWAIG TGKVATPLQA QEVHIAVRDW LKKNVSAEVA SKTRIIYGGS VNGSNCSELA KQEDIDGFLV
301: GGASLKGPEF AVIVNSVTSK KVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.