Factsheet for Solyc01g111120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004042	Potato	cytosol, plastid	97.85	97.85
Solyc10g054870.1.1	Tomato	plastid	80.98	84.62
KRH32560	Soybean	nucleus, plastid	76.69	82.24
KRH19958	Soybean	plastid	76.07	81.31
KRH67765	Soybean	extracellular, nucleus, plastid	76.38	80.58
KRG96044	Soybean	nucleus	76.07	80.26
Bra030316.1-P	Field mustard	plastid	75.15	78.53
CDY15911	Canola	plastid	75.15	78.53
CDX99612	Canola	plastid	75.15	78.53
AT2G21170.3	Thale cress	plastid	75.77	78.41
VIT_03s0038g01780.t01	Wine grape	plastid	77.91	78.4
CDY13836	Canola	plastid	75.77	77.19
Bra031167.1-P	Field mustard	plastid	75.46	76.88
CDX82002	Canola	plastid	75.15	76.56
TraesCS5A01G324200.1	Wheat	plastid	69.02	74.75
TraesCS5D01G331100.1	Wheat	plastid	68.4	74.58
TraesCS5B01G324800.1	Wheat	plastid	68.1	74.25
Zm00001d006221_P001	Maize	plastid	67.79	74.16
HORVU5Hr1G082630.5	Barley	plastid	68.4	73.84
Os09t0535000-02	Rice	extracellular	68.4	73.36
GSMUA_Achr3P26710_001	Banana	plastid	69.33	72.67
GSMUA_Achr9P24140_001	Banana	plastid	67.48	72.61
EER99254	Sorghum	plastid	67.48	72.37
Zm00001d021310_P001	Maize	extracellular	67.48	72.37
Solyc06g005490.2.1	Tomato	plastid	44.48	56.42
Solyc04g011510.2.1	Tomato	plastid	43.56	54.83

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	MapMan:3.12.3
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006091
GO:GO:0006094	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0019563	GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785
UniProt:K4B3X5	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139
PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	EnsemblPlantsGene:Solyc01g111120.2	EnsemblPlants:Solyc01g111120.2.1	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI000276753D	:	:

Description

No Description!

Coordinates

chr1:-:97493179..97499394

Molecular Weight (calculated)

34667.0 Da

IEP (calculated)

6.895

GRAVY (calculated)

-0.047

Length

326 amino acids

Sequence
(BLAST)

001: MAVASTSLAS QMSGPKSVTS ISCPQFSGLR KSLSKLDNSV SFSTSQAFFQ NVDSHLRISS DRKGCRAVVA MAGSGKFFVG GNWKCNGTKD SISKLVSDLN
101: SAQLESDVDV VVAPPFLYID QVKNSLTDRI EVSAQNCWTG KGGAFTGEIS VEQVKDLGCK WVILGHSERR HVIGENDEFI GKKAAYALSQ GVGVIACIGE
201: LLEEREAGKT FDVCFQQLKA FADAIPSWDN VVIAYEPVWA IGTGKVASPE QAQEVHVAVR DWLTKNVSAE VASKTRIIYG GSVNGSNSSD LAKKEDIDGF
301: LVGGASLKGP EFATIVNSVT AKKVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.