CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19958	Soybean	plastid	88.82	88.52
KRH67765	Soybean	extracellular, nucleus, plastid	83.22	81.88
KRG96044	Soybean	nucleus	82.89	81.55
AT2G21170.3	Thale cress	plastid	80.26	77.46
Bra030316.1-P	Field mustard	plastid	78.95	76.92
CDY15911	Canola	plastid	78.95	76.92
CDX99612	Canola	plastid	78.95	76.92
PGSC0003DMT400011335	Potato	plastid	80.59	76.8
Solyc01g111120.2.1	Tomato	plastid	82.24	76.69
Solyc10g054870.1.1	Tomato	plastid	78.62	76.6
PGSC0003DMT400004042	Potato	cytosol, plastid	81.91	76.38
VIT_03s0038g01780.t01	Wine grape	plastid	81.25	76.23
CDY13836	Canola	plastid	79.28	75.31
Bra031167.1-P	Field mustard	plastid	78.62	74.69
CDX82002	Canola	plastid	78.29	74.38
TraesCS5B01G324800.1	Wheat	plastid	73.03	74.25
TraesCS5A01G324200.1	Wheat	plastid	73.03	73.75
TraesCS5D01G331100.1	Wheat	plastid	72.37	73.58
Zm00001d006221_P001	Maize	plastid	71.71	73.15
GSMUA_Achr9P24140_001	Banana	plastid	72.7	72.94
HORVU5Hr1G082630.5	Barley	plastid	72.04	72.52
Os09t0535000-02	Rice	extracellular	72.37	72.37
GSMUA_Achr3P26710_001	Banana	plastid	73.68	72.03
Zm00001d021310_P001	Maize	extracellular	70.72	70.72
EER99254	Sorghum	plastid	70.39	70.39
KRH10260	Soybean	nucleus	50.0	60.08
KRH23071	Soybean	cytosol, nucleus	40.79	58.49

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:100798459
MapMan:3.12.3	Gene3D:3.20.20.70	EMBL:ACUP02006129	InterPro:Aldolase_TIM	EMBL:BT098037	UniProt:C6TK33
EnsemblPlantsGene:GLYMA_10G059500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006091	GO:GO:0006094
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0019563	GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785	EnsemblPlants:KRH32560
ProteinID:KRH32560	ProteinID:KRH32560.1	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7003
SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS
UniParc:UPI0001B169EB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:5497547..5503529

Molecular Weight (calculated)

32552.5 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.032

Length

304 amino acids

Sequence
(BLAST)

001: MAATSTSLFS SNLHSLNSQP FSSSLSFFRN VHSTLSFPSS KPSRGVVAMA GSGKFFVGGN WKCNGTKDSI RKLVSDLNSA TLESDVDVVV APPFVYIDQV
101: KNSITDRIEI SAQNSWVGKG GAFTGEISVE QLKDLGCKWV ILGHSERRHV IGENDEFIGK KAVYALSEGL GVIACIGELL QEREAGKTFD VCFQQLKAFA
201: DVVPSWDNIV IAYEPVWAIG TGKVATPEQA QEVHAAVRDW LKKNVSAEVS SKTRIIYGGS VNASNSAELA KQEDIDGFLV GGASLKGPEF ATIINSVTSK
301: KVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.