CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67765	Soybean	extracellular, nucleus, plastid	97.41	97.41
KRH32560	Soybean	nucleus, plastid	81.55	82.89
KRH19958	Soybean	plastid	78.64	79.67
CDX99612	Canola	plastid	79.61	78.85
Bra030316.1-P	Field mustard	plastid	78.96	78.21
CDY15911	Canola	plastid	78.96	78.21
AT2G21170.3	Thale cress	plastid	79.61	78.1
Solyc10g054870.1.1	Tomato	plastid	77.67	76.92
CDY13836	Canola	plastid	79.61	76.88
VIT_03s0038g01780.t01	Wine grape	plastid	80.58	76.85
Bra031167.1-P	Field mustard	plastid	78.96	76.25
Solyc01g111120.2.1	Tomato	plastid	80.26	76.07
CDX82002	Canola	plastid	78.64	75.94
PGSC0003DMT400011335	Potato	plastid	78.32	75.86
PGSC0003DMT400004042	Potato	cytosol, plastid	79.61	75.46
GSMUA_Achr9P24140_001	Banana	plastid	73.46	74.92
Zm00001d006221_P001	Maize	plastid	70.87	73.49
GSMUA_Achr3P26710_001	Banana	plastid	73.79	73.31
TraesCS5A01G324200.1	Wheat	plastid	69.9	71.76
Os09t0535000-02	Rice	extracellular	69.9	71.05
TraesCS5D01G331100.1	Wheat	plastid	68.61	70.9
TraesCS5B01G324800.1	Wheat	plastid	68.61	70.9
EER99254	Sorghum	plastid	69.58	70.72
HORVU5Hr1G082630.5	Barley	plastid	68.93	70.53
Zm00001d021310_P001	Maize	extracellular	68.61	69.74
KRH10260	Soybean	nucleus	50.16	61.26
KRH23071	Soybean	cytosol, nucleus	40.78	59.43

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:100819824
MapMan:3.12.3	Gene3D:3.20.20.70	UniProt:A0A0R0EPH6	EMBL:ACUP02012143	InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_19G186000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
InterPro:IPR000652	InterPro:IPR013785	EnsemblPlants:KRG96044	ProteinID:KRG96044	ProteinID:KRG96044.1	HAMAP:MF_00147_B
PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	MetaCyc:PWY-1042
MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7003	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf
InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0001B8376A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:+:44453112..44457410

Molecular Weight (calculated)

33162.6 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.065

Length

309 amino acids

Sequence
(BLAST)

001: MAATSTSLAS QLYIGLRRPC LKLDSFNSQS FSVFDPNLRL SLSPPRPSRA IVAMAGTGKF FVGGNWKCNG TKDSISKLVA DLNSAKLEPD VDVVVAPPFL
101: YIDQVKNSLT ERIEISAQNS WVGKGGAFTG EISAEQLKDL GCKWVVLGHS ERRHIIGEND EFIGKKAAYA LSQGLGVIAC IGELLEEREA GKTFDVCFQQ
201: LKAYADAVPS WDNIVIAYEP VWAIGTGKVA TPQQAQEVHV AVRDWLKKNV PDEVASKTRI IYGGSVNGGN SAELAKQEDI DGFLVGGASL KGPEFATIVN
301: SVTSKKVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.