Factsheet for Os09t0535000-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 17189339
extracellular: 18986194
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

msms PMID: 18986194 doi

YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa

Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99254	Sorghum	plastid	87.83	87.83
Zm00001d006221_P001	Maize	plastid	85.53	87.25
Zm00001d021310_P001	Maize	extracellular	87.17	87.17
TraesCS5D01G331100.1	Wheat	plastid	83.55	84.95
TraesCS5B01G324800.1	Wheat	plastid	83.22	84.62
TraesCS5A01G324200.1	Wheat	plastid	83.55	84.39
HORVU5Hr1G082630.5	Barley	plastid	82.57	83.11
GSMUA_Achr9P24140_001	Banana	plastid	75.99	76.24
GSMUA_Achr3P26710_001	Banana	plastid	75.0	73.31
KRH32560	Soybean	nucleus, plastid	72.37	72.37
KRH19958	Soybean	plastid	72.37	72.13
Solyc10g054870.1.1	Tomato	plastid	73.03	71.15
KRH67765	Soybean	extracellular, nucleus, plastid	71.38	70.23
PGSC0003DMT400011335	Potato	plastid	73.36	69.91
KRG96044	Soybean	nucleus	71.05	69.9
CDX99612	Canola	plastid	71.38	69.55
CDY15911	Canola	plastid	70.72	68.91
Bra030316.1-P	Field mustard	plastid	70.72	68.91
VIT_03s0038g01780.t01	Wine grape	plastid	73.36	68.83
Solyc01g111120.2.1	Tomato	plastid	73.36	68.4
PGSC0003DMT400004042	Potato	cytosol, plastid	72.7	67.79
CDY13836	Canola	plastid	70.72	67.19
AT2G21170.3	Thale cress	plastid	69.08	66.67
CDX82002	Canola	plastid	70.07	66.56
Bra031167.1-P	Field mustard	plastid	70.07	66.56
Os01t0841600-01	Rice	cytosol	51.97	61.96
Os01t0147900-01	Rice	extracellular	50.66	60.87

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	MapMan:3.12.3
Gene3D:3.20.20.70	EntrezGene:4347691	InterPro:Aldolase_TIM	ProteinID:BAD33340.1	ProteinID:BAD34212.1	ProteinID:BAF25691.1
ProteinID:BAT09138.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575
GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005829
GO:GO:0005975	GO:GO:0006091	GO:GO:0006094	GO:GO:0006096	GO:GO:0006139	GO:GO:0006629
GO:GO:0006642	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0019563	GO:GO:0032504	GO:GO:0046166
GO:GO:0048046	GO:GO:0080022	InterPro:IPR000652	InterPro:IPR013785	HAMAP:MF_00147_B	EnsemblPlantsGene:Os09g0535000
EnsemblPlants:Os09t0535000-02	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF15
UniProt:Q69K00	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase
InterPro:Triosephosphate_isomerase_AS	UniParc:UPI00003FF372	RefSeq:XP_015612500.1	SEG:seg	:	:

Description

Similar to Triosephosphate isomerase. (Os09t0535000-01);Similar to Triosephosphate isomerase, chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase). (Os09t0535000-02);Similar to Triosephosphate isomerase. (Os09t0535000-03)

Coordinates

chr9:-:21033111..21036395

Molecular Weight (calculated)

32394.7 Da

IEP (calculated)

7.424

GRAVY (calculated)

0.004

Length

304 amino acids

Sequence
(BLAST)

001: MAAPSSLASS HLSRLADLRR AGVAAAAPAH PQQLRLGCSR RRAQRVVAMA GSGKFFVGGN WKCNGTKDSV SKLVTELNAA TLEPDVDVVV APPFIYIDQV
101: KNSLTDRIEV SAQNVWIGKG GAYTGEISAE QLVDIGCQWV ILGHSERRHV IGEDDQFIGK KAAYALSQNV KVIACIGELL EEREAGKTFD VCFKQMKAFA
201: DSITNWADVV IAYEPVWAIG TGKVATPEQA QEVHAAVRDW LKTNVSPEVA SGIRIIYGGS VNAANCAELA KKEDIDGFLV GGASLKGPDF ATIINSVTSK
301: KVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.