Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
18260611
extracellular: 18372294 plasma membrane: 19526560 extracellular: 23159799 extracellular: 25047395 extracellular: 26072143 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
25047395
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
18372294
doi
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID:
19526560
doi
Department of Biochemistry and Molecular Biology, College of Life Science, Nanjing Agricultural University, Nanjing, Jiangsu, PR China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039865_P002 | Maize | cytosol | 89.33 | 87.26 |
| Zm00001d008619_P001 | Maize | plastid | 86.17 | 87.2 |
| TraesCS3A01G073300.1 | Wheat | cytosol, unclear | 86.96 | 86.96 |
| TraesCS3D01G073000.1 | Wheat | golgi | 86.96 | 86.96 |
| TraesCS3B01G087400.1 | Wheat | cytosol, golgi, unclear | 86.56 | 86.56 |
| Os01t0841600-01 | Rice | cytosol | 80.63 | 80.0 |
| Zm00001d040375_P001 | Maize | cytosol | 34.78 | 80.0 |
| EES00320 | Sorghum | cytosol, plastid | 88.14 | 73.11 |
| HORVU3Hr1G013350.1 | Barley | extracellular, plastid | 85.38 | 70.82 |
| Os09t0535000-02 | Rice | extracellular | 60.87 | 50.66 |
| Zm00001d030216_P001 | Maize | mitochondrion | 37.94 | 37.07 |
Protein Annotations
| KEGG:00010+5.3.1.1 | KEGG:00051+5.3.1.1 | KEGG:00562+5.3.1.1 | KEGG:00710+5.3.1.1 | MapMan:2.1.1.3 | MapMan:3.1.2.1 |
| Gene3D:3.20.20.70 | EntrezGene:4325211 | ProteinID:AAB63603.1 | EMBL:AK060920 | InterPro:Aldolase_TIM | ProteinID:BAB21144.1 |
| ProteinID:BAB43989.1 | ProteinID:BAF03930.1 | ProteinID:BAS70389.1 | ProteinID:EAZ10535.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004807 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0005975 | GO:GO:0006091 | GO:GO:0006094 | GO:GO:0006096 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016853 |
| GO:GO:0019563 | GO:GO:0046166 | InterPro:IPR000652 | InterPro:IPR013785 | EMBL:M87064 | HAMAP:MF_00147_B |
| EnsemblPlantsGene:Os01g0147900 | EnsemblPlants:Os01t0147900-01 | UniProt:P48494 | PFAM:PF00121 | ScanProsite:PS00171 | PFscan:PS51440 |
| PANTHER:PTHR21139 | PANTHER:PTHR21139:SF16 | SUPFAM:SSF51351 | TIGRFAMs:TIGR00419 | InterPro:TIM_sf | InterPro:TrioseP_Isoase_bac/euk |
| InterPro:Triosephosphate_isomerase | InterPro:Triosephosphate_isomerase_AS | UniParc:UPI0000001735 | RefSeq:XP_015621507.1 | SEG:seg | : |
Description
TRIOSEPHOSPHATE ISOMERASETriosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase). (Os01t0147900-01)
Coordinates
chr1:-:2589835..2593568
Molecular Weight (calculated)
27064.4 Da
IEP (calculated)
5.150
GRAVY (calculated)
0.053
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKFFVGGN WKCNGTTDQV DKIVKILNEG QIASTDVVEV VVSPPYVFLP VVKSQLRPEI QVAAQNCWVK KGGAFTGEVS AEMLVNLSIP WVILGHSERR
101: SLLGESNEFV GDKVAYALSQ GLKVIACVGE TLEQRESGST MDVVAAQTKA ISERIKDWTN VVVAYEPVWA IGTGKVATPD QAQEVHDGLR KWLAANVSAE
201: VAESTRIIYG GSVTGANCKE LAAKPDVDGF LVGGASLKPE FIDIINSATV KSA
101: SLLGESNEFV GDKVAYALSQ GLKVIACVGE TLEQRESGST MDVVAAQTKA ISERIKDWTN VVVAYEPVWA IGTGKVATPD QAQEVHDGLR KWLAANVSAE
201: VAESTRIIYG GSVTGANCKE LAAKPDVDGF LVGGASLKPE FIDIINSATV KSA
001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
Arabidopsis Description
CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.