Factsheet for TraesCS3D01G073000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G073300.1	Wheat	cytosol, unclear	98.81	98.81
TraesCS3B01G087400.1	Wheat	cytosol, golgi, unclear	97.23	97.23
Os01t0147900-01	Rice	extracellular	86.96	86.96
Zm00001d039865_P002	Maize	cytosol	88.54	86.49
Zm00001d008619_P001	Maize	plastid	84.98	86.0
Zm00001d040375_P001	Maize	cytosol	37.15	85.45
PGSC0003DMT400071330	Potato	cytosol, extracellular	81.42	81.1
GSMUA_Achr11P...	Banana	plasma membrane	81.03	80.71
GSMUA_Achr5P28700_001	Banana	cytosol	80.24	79.92
CDY02939	Canola	cytosol	79.45	79.45
CDX76095	Canola	cytosol	79.45	79.13
CDX76094	Canola	cytosol	79.45	79.13
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	79.45	79.13
Bra014743.1-P	Field mustard	cytosol	79.45	79.13
AT3G55440.1	Thale cress	cytosol	79.45	79.13
KRH10260	Soybean	nucleus	78.66	78.66
HORVU3Hr1G013350.1	Barley	extracellular, plastid	94.47	78.36
CDY02937	Canola	cytosol	78.66	78.35
Bra014744.1-P	Field mustard	cytosol	78.66	78.35
KRH23071	Soybean	cytosol, nucleus	65.22	77.83
VIT_06s0004g04800.t01	Wine grape	cytosol	77.08	76.77
GSMUA_Achr9P03330_001	Banana	cytosol	78.26	75.57
Solyc06g005490.2.1	Tomato	plastid	76.68	75.49
Solyc04g011510.2.1	Tomato	plastid	76.68	74.9
EES00320	Sorghum	cytosol, plastid	87.75	72.79
GSMUA_AchrUn_...	Banana	cytosol	55.73	60.78
CDY40220	Canola	cytosol	51.78	58.74
TraesCS5D01G331100.1	Wheat	plastid	62.06	52.51
Bra007163.1-P	Field mustard	cytosol	39.13	51.56
CDY53690	Canola	cytosol	37.15	46.77
Bra003214.1-P	Field mustard	cytosol	37.15	46.77
CDY41233	Canola	cytosol, extracellular	31.23	46.2
Zm00001d030216_P001	Maize	mitochondrion	39.92	39.0

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	InterPro:IPR000652	InterPro:IPR013785	HAMAP:MF_00147_B	PFAM:PF00121
ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF16	SUPFAM:SSF51351	TIGRFAMs:TIGR00419
InterPro:TIM_sf	EnsemblPlantsGene:TraesCS3D01G073000	EnsemblPlants:TraesCS3D01G073000.1	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS
TIGR:cd00311	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:33159459..33162518

Molecular Weight (calculated)

26834.2 Da

IEP (calculated)

5.139

GRAVY (calculated)

0.112

Length

253 amino acids

Sequence
(BLAST)

001: MGRKFFVGGN WKCNGTVEQV ESIVNTLNAG QIASTDVVEV VVSPPYVFLP TVKGKLRPEI QVAAQNCWVK KGGAFTGEVS AEMLVNLGVP WVILGHSERR
101: SLMGESSEFV GEKVAYALAQ GLKVIACVGE TLEQREAGST MAVVAEQTKA IADKIKDWTN VVVAYEPVWA IGTGKVASPA QAQEVHANLR DWLKTNVSPE
201: VAESTRIIYG GSVTGASCKE LAAQPDVDGF LVGGASLKPE FIDIINAATV KSA

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.