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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • cytosol 2
  • plastid 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY40220 Canola cytosol 86.98 74.89
Zm00001d009835_P001 Maize cytosol 34.9 51.54
AT3G55440.1 Thale cress cytosol 66.67 50.39
Bra014743.1-P Field mustard cytosol 66.67 50.39
Bra014744.1-P Field mustard cytosol 65.62 49.61
PGSC0003DMT400071330 Potato cytosol, extracellular 57.81 43.7
Solyc04g011510.2.1 Tomato plastid 57.29 42.47
GSMUA_Achr5P28700_001 Banana cytosol 55.21 41.73
GSMUA_Achr11P... Banana plasma membrane 54.69 41.34
KXG33676 Sorghum cytosol, plastid 54.69 41.02
Zm00001d012407_P004 Maize cytosol 54.17 40.62
VIT_13s0019g01090.t01 Wine grape cytosol, endoplasmic reticulum 53.65 40.55
Os01t0841600-01 Rice cytosol 53.65 40.39
TraesCS3A01G359400.1 Wheat golgi 52.6 39.45
TraesCS3D01G073000.1 Wheat golgi 51.56 39.13
TraesCS3B01G392000.1 Wheat cytosol 48.96 38.06
Zm00001d029307_P001 Maize cytosol 32.29 36.05
Bra003214.1-P Field mustard cytosol 36.98 35.32
GSMUA_AchrUn_... Banana cytosol 41.67 34.48
HORVU3Hr1G013350.1 Barley extracellular, plastid 51.56 32.46
Bra030316.1-P Field mustard plastid 45.83 28.21
Bra031167.1-P Field mustard plastid 45.31 27.19
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1Gene3D:3.20.20.70MapMan:50.5.3
InterPro:Aldolase_TIMEnsemblPlantsGene:Bra007163EnsemblPlants:Bra007163.1EnsemblPlants:Bra007163.1-PGO:GO:0003674GO:GO:0003824
GO:GO:0004807GO:GO:0008150GO:GO:0008152InterPro:IPR000652InterPro:IPR013785UniProt:M4CSH1
PFAM:PF00121ScanProsite:PS00171PFscan:PS51440PANTHER:PTHR21139PANTHER:PTHR21139:SF16SUPFAM:SSF51351
InterPro:TIM_sfInterPro:Triosephosphate_isomeraseInterPro:Triosephosphate_isomerase_ASUniParc:UPI0002542A35::
Description
AT3G55440 (E=3e-048) ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase
Coordinates
chrA09:+:27650806..27652887
Molecular Weight (calculated)
21095.0 Da
IEP (calculated)
4.507
GRAVY (calculated)
-0.006
Length
192 amino acids
Sequence
(BLAST)
001: MFGAEIIERQ FPMNGTAEEV KKIVNTLNEA QVPSQDVVVC WRQGCLCTFS RFESDRLCCG ETLEQQEAGS TMDVVAAQTK AIADRVSNWS NVVIAYEPVW
101: AIGTGKVASP AQTQEVSCFL CVYDELRKWL AKNVSDDVAA TTHIIYREDP LNGGNFKELG GQADVDGFLV GGASLKLHLY CVLSFVCFSQ TH
Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)
001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
Arabidopsis Description
CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.