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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • cytosol 4
  • peroxisome 1
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:peroxisome
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 cytosol: 22313117
extracellular: 22313117
extracellular: 28248230
msms PMID: 28248230 doi
E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g011510.2.1 Tomato plastid 91.73 89.96
AT3G55440.1 Thale cress cytosol 88.19 88.19
CDX76094 Canola cytosol 88.19 88.19
CDY02939 Canola cytosol 87.8 88.14
Bra014743.1-P Field mustard cytosol 87.8 87.8
CDY02937 Canola cytosol 87.8 87.8
CDX76095 Canola cytosol 87.4 87.4
Bra014744.1-P Field mustard cytosol 87.01 87.01
GSMUA_Achr11P... Banana plasma membrane 85.83 85.83
VIT_13s0019g01090.t01 Wine grape cytosol, endoplasmic reticulum 85.04 85.04
GSMUA_Achr5P28700_001 Banana cytosol 84.25 84.25
TraesCS3D01G073000.1 Wheat golgi 81.1 81.42
Zm00001d012407_P004 Maize cytosol 78.74 78.12
Os01t0841600-01 Rice cytosol 78.35 78.04
KXG33676 Sorghum cytosol, plastid 78.35 77.73
TraesCS3A01G359400.1 Wheat golgi 76.77 76.17
TraesCS3B01G392000.1 Wheat cytosol 72.83 74.9
HORVU3Hr1G013350.1 Barley extracellular, plastid 81.5 67.87
CDY40220 Canola cytosol 57.48 65.47
GSMUA_AchrUn_... Banana cytosol 59.45 65.09
Zm00001d009835_P001 Maize cytosol 31.1 60.77
Bra007163.1-P Field mustard cytosol 43.7 57.81
Bra003214.1-P Field mustard cytosol 40.94 51.74
CDY53690 Canola cytosol 40.94 51.74
CDY41233 Canola cytosol, extracellular 33.07 49.12
PGSC0003DMT400011335 Potato plastid 58.66 46.71
PGSC0003DMT400004042 Potato cytosol, plastid 59.45 46.32
Zm00001d029307_P001 Maize cytosol 28.35 41.86
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1MapMan:2.1.1.3MapMan:3.1.2.1
Gene3D:3.20.20.70ProteinID:ABB02628ProteinID:ABB02628.1InterPro:Aldolase_TIMEMBL:DQ222496GO:GO:0003674
GO:GO:0003824GO:GO:0004807GO:GO:0005488GO:GO:0005507GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005773
GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0005975GO:GO:0006091GO:GO:0006096
GO:GO:0006139GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009506GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009628GO:GO:0009651
GO:GO:0009719GO:GO:0009735GO:GO:0009987GO:GO:0010043GO:GO:0016020GO:GO:0016853
GO:GO:0030312GO:GO:0044262GO:GO:0046686GO:GO:0048046InterPro:IPR000652InterPro:IPR013785
UniProt:M1CNK1HAMAP:MF_00147_BPFAM:PF00121EnsemblPlantsGene:PGSC0003DMG400027745PGSC:PGSC0003DMG400027745EnsemblPlants:PGSC0003DMT400071330
ScanProsite:PS00171PFscan:PS51440PANTHER:PTHR21139PANTHER:PTHR21139:SF16SUPFAM:SSF51351TIGRFAMs:TIGR00419
InterPro:TIM_sfInterPro:TrioseP_Isoase_bac/eukInterPro:Triosephosphate_isomeraseInterPro:Triosephosphate_isomerase_ASUniParc:UPI0002968A86SEG:seg
Description
Triosephosphate isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400027745]
Coordinates
chr4:+:7106812..7112072
Molecular Weight (calculated)
27029.4 Da
IEP (calculated)
5.791
GRAVY (calculated)
0.067
Length
254 amino acids
Sequence
(BLAST)
001: MGRTFFVGGN WKCNGTSEEI KKIVATLNAG QVPSQDVVEV VVSPPYVFLP LVKNELRSDF HVAAQNCWVK KGGAFTGEVS ADMLVNLGIP WVILGHSERR
101: AILGESNEFV GDKVAYALSQ GLKVIACVGE TLEQRESGST MDVVAAQTKA IAERVKDWSN VVVAYEPVWA IGTGKVATPA QAQEVHAELR KWLQANVSAE
201: VAASTRIIYG GSVSGGNCKE LAGQPDVDGF LVGGASLKPE FIDIIKAAEV KKSA
Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)
001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
Arabidopsis Description
CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.