CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76095	Canola	cytosol	98.03	98.03
CDX76094	Canola	cytosol	97.64	97.64
CDY02939	Canola	cytosol	97.24	97.63
AT3G55440.1	Thale cress	cytosol	96.85	96.85
PGSC0003DMT400071330	Potato	cytosol, extracellular	87.8	87.8
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	83.07	83.07
GSMUA_Achr11P...	Banana	plasma membrane	82.28	82.28
GSMUA_Achr5P28700_001	Banana	cytosol	82.28	82.28
Solyc04g011510.2.1	Tomato	plastid	83.46	81.85
TraesCS3D01G073000.1	Wheat	golgi	78.35	78.66
KXG33676	Sorghum	cytosol, plastid	79.13	78.52
Zm00001d012407_P004	Maize	cytosol	78.74	78.12
Os01t0841600-01	Rice	cytosol	78.35	78.04
TraesCS3A01G359400.1	Wheat	golgi	78.35	77.73
TraesCS3B01G392000.1	Wheat	cytosol	73.62	75.71
CDY40220	Canola	cytosol	64.96	73.99
HORVU3Hr1G013350.1	Barley	extracellular, plastid	77.95	64.92
GSMUA_AchrUn_...	Banana	cytosol	57.87	63.36
Zm00001d009835_P001	Maize	cytosol	29.92	58.46
CDY53690	Canola	cytosol	44.09	55.72
CDY41233	Canola	cytosol, extracellular	35.83	53.22
CDY15911	Canola	plastid	61.42	50.0
CDX99612	Canola	plastid	61.02	49.68
CDY13836	Canola	plastid	61.02	48.44
CDX82002	Canola	plastid	61.02	48.44
Zm00001d029307_P001	Maize	cytosol	27.56	40.7

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	GO:A0A078EPB1	InterPro:Aldolase_TIM	EnsemblPlants:CDY02937	ProteinID:CDY02937	ProteinID:CDY02937.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00115207001	InterPro:IPR000652	InterPro:IPR013785	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171
PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF16	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6142
MetaCyc:PWY-7003	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase
InterPro:Triosephosphate_isomerase_AS	UniPathway:UPA00109	UniPathway:UPA00138	UniParc:UPI0003C6F7E9	SEG:seg	:

Description

BnaC04g25490D

Coordinates

chrLK031938:+:684709..687143

Molecular Weight (calculated)

27159.5 Da

IEP (calculated)

5.793

GRAVY (calculated)

0.050

Length

254 amino acids

Sequence
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF HVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: ALLNETNEFV GDKVAYALAQ GLSVIACVGE TLEQREAGST MDVVAAQTKA IADRVSNWSK VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.