CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53690	Canola	cytosol	49.71	42.29
CDX76095	Canola	cytosol	53.8	36.22
CDX76094	Canola	cytosol	53.22	35.83
AT3G55440.1	Thale cress	cytosol	53.22	35.83
CDY02937	Canola	cytosol	53.22	35.83
CDY02939	Canola	cytosol	52.63	35.57
PGSC0003DMT400071330	Potato	cytosol, extracellular	49.12	33.07
Solyc04g011510.2.1	Tomato	plastid	48.54	32.05
GSMUA_Achr11P...	Banana	plasma membrane	47.37	31.89
Zm00001d012407_P004	Maize	cytosol	47.37	31.64
TraesCS3B01G392000.1	Wheat	cytosol	45.61	31.58
TraesCS3A01G359400.1	Wheat	golgi	46.78	31.25
TraesCS3D01G073000.1	Wheat	golgi	46.2	31.23
CDY40220	Canola	cytosol	40.35	30.94
KXG33676	Sorghum	cytosol, plastid	46.2	30.86
Zm00001d009835_P001	Maize	cytosol	23.39	30.77
GSMUA_Achr5P28700_001	Banana	cytosol	45.03	30.32
Os01t0841600-01	Rice	cytosol	44.44	29.8
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	43.86	29.53
HORVU3Hr1G013350.1	Barley	extracellular, plastid	45.03	25.25
GSMUA_AchrUn_...	Banana	cytosol	33.92	25.0
Zm00001d029307_P001	Maize	cytosol	22.81	22.67
CDY15911	Canola	plastid	36.84	20.19
CDX99612	Canola	plastid	36.84	20.19
CDY13836	Canola	plastid	36.84	19.69
CDX82002	Canola	plastid	36.84	19.69

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	Gene3D:3.20.20.70	MapMan:35.1
GO:A0A078HWU0	UniProt:A0A078HWU0	InterPro:Aldolase_TIM	EnsemblPlants:CDY41233	ProteinID:CDY41233	ProteinID:CDY41233.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00072655001
InterPro:IPR000652	InterPro:IPR013785	PFAM:PF00121	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF16
MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7003	SUPFAM:SSF51351	InterPro:TIM_sf
InterPro:Triosephosphate_isomerase	UniPathway:UPA00109	UniPathway:UPA00138	UniParc:UPI0004EB8BF3	:	:

Description

BnaC08g26250DBnaC08g26250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWU0]

Coordinates

chrLK032493:-:257507..258439

Molecular Weight (calculated)

18488.1 Da

IEP (calculated)

6.773

GRAVY (calculated)

0.102

Length

171 amino acids

Sequence
(BLAST)

001: MLVNLDIPRV ILGHSDILIF YLNPTFVVCR GQGCLDKVAY ALAQGLKVIA CVGETLEQRE AGSTMDVVDA QNQAIANFVG HWNRKGRQPS PSSVHDKLRK
101: WLAKNVSDDV AATSLQPASY TEELVGQTDV DGFLVGGASL KSKPLTNVFS SSFIVAFAGF EFRAIVARSE S

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.