Factsheet for VIT_13s0019g01090.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27689984

msms PMID: 27689984 doi

A Filippi, E Petrussa, U Rajcevic, V Čurin Šerbec, S Passamonti, G Renzone, A Scaloni, M Zancani, A Vianello, E Braidot

Blood Transfusion Centre of Slovenia, Department of R&D, Šlajmerjeva 6, 1000 Ljubljana, Slovenia. uros.rajcevic@ztm.si., Blood Transfusion Centre of Slovenia, Department of R&D, Šlajmerjeva 6, 1000 Ljubljana, Slovenia. vladka.curin@ztm.si., Department of Agricultural, Food, Animal and Environmental Sciences, University of Udine, Via delle Scienze 91, 33100 Udine, Italy. angelo.vianello@uniud.it., Department of Agricultural, Food, Animal and Environmental Sciences, University of Udine, Via delle Scienze 91, 33100 Udine, Italy. antonio.filippi@uniud.it., Department of Agricultural, Food, Animal and Environmental Sciences, University of Udine, Via delle Scienze 91, 33100 Udine, Italy. elisa.petrussa@uniud.it., Department of Agricultural, Food, Animal and Environmental Sciences, University of Udine, Via delle Scienze 91, 33100 Udine, Italy. enrico.braidot@uniud.it., Department of Agricultural, Food, Animal and Environmental Sciences, University of Udine, Via delle Scienze 91, 33100 Udine, Italy. marco.zancani@uniud.it., Department of Life Sciences, University of Trieste, via L. Giorgieri 1, 34127 Trieste, Italy. spassamonti@units.it., Proteomics and Mass Spectrometry Laboratory, ISPAAM, CNR, via Argine, 1085-80147 Napoli, Italy. andrea.scaloni@ispaam.cnr.it., Proteomics and Mass Spectrometry Laboratory, ISPAAM, CNR, via Argine, 1085-80147 Napoli, Italy. giovanni.renzone@ispaam.cnr.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071330	Potato	cytosol, extracellular	85.04	85.04
GSMUA_Achr5P28700_001	Banana	cytosol	84.65	84.65
GSMUA_Achr11P...	Banana	plasma membrane	84.25	84.25
VIT_06s0004g04800.t01	Wine grape	cytosol	83.86	83.86
CDX76094	Canola	cytosol	83.86	83.86
CDY02939	Canola	cytosol	83.46	83.79
Bra014743.1-P	Field mustard	cytosol	83.46	83.46
CDX76095	Canola	cytosol	83.07	83.07
CDY02937	Canola	cytosol	83.07	83.07
Bra014744.1-P	Field mustard	cytosol	82.68	82.68
AT3G55440.1	Thale cress	cytosol	82.28	82.28
Solyc04g011510.2.1	Tomato	plastid	81.5	79.92
Os01t0841600-01	Rice	cytosol	79.92	79.61
TraesCS3D01G073000.1	Wheat	golgi	79.13	79.45
Zm00001d012407_P004	Maize	cytosol	79.13	78.52
TraesCS3A01G359400.1	Wheat	golgi	78.74	78.12
KXG33676	Sorghum	cytosol, plastid	78.74	78.12
TraesCS3B01G392000.1	Wheat	cytosol	75.2	77.33
HORVU3Hr1G013350.1	Barley	extracellular, plastid	79.13	65.9
GSMUA_AchrUn_...	Banana	cytosol	59.06	64.66
CDY40220	Canola	cytosol	54.33	61.88
Zm00001d009835_P001	Maize	cytosol	29.92	58.46
Bra007163.1-P	Field mustard	cytosol	40.55	53.65
Bra003214.1-P	Field mustard	cytosol	37.01	46.77
CDY53690	Canola	cytosol	37.01	46.77
VIT_03s0038g01780.t01	Wine grape	plastid	59.45	46.6
CDY41233	Canola	cytosol, extracellular	29.53	43.86
Zm00001d029307_P001	Maize	cytosol	26.77	39.53

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	EntrezGene:100263345	wikigene:100263345
MapMan:2.1.1.3	MapMan:3.1.2.1	Gene3D:3.20.20.70	EMBL:AM472340	InterPro:Aldolase_TIM	ProteinID:CAN70587
ProteinID:CAN70587.1	ProteinID:CBI31684	ProteinID:CBI31684.3	UniProt:D7TLU7	EMBL:FN595998	GO:GO:0003674
GO:GO:0003824	GO:GO:0004807	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0006091	GO:GO:0006094	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0019563
GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785	EntrezGene:LOC100263345	wikigene:LOC100263345	HAMAP:MF_00147_B
PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF16	SUPFAM:SSF51351
TIGR:TC58364	TIGR:TC63770	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase
InterPro:Triosephosphate_isomerase_AS	UniParc:UPI00015C9B55	ArrayExpress:VIT_13s0019g01090	EnsemblPlantsGene:VIT_13s0019g01090	EnsemblPlants:VIT_13s0019g01090.t01	unigene:Vvi.7181
unigene:Vvi.9343	RefSeq:XP_002283693	RefSeq:XP_002283693.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:2780025..2784703

Molecular Weight (calculated)

27129.7 Da

IEP (calculated)

6.766

GRAVY (calculated)

0.093

Length

254 amino acids

Sequence
(BLAST)

001: MGRKFFVGGN WKCNGTGEEV KKIVSTLNAG EVPSGDVVEV VVSPPFVFLP LVKSTLRPDF HVAAQNCWVK KGGAFTGEIS AEMLVNLGIP WVIIGHSERR
101: LLLNESNEFV GEKVAYALSK GLKVIACVGE TLEQRESGST MEVVAAQTKA IADKVSNWAN VVLAYEPVWA IGTGKVATPA QAQEVHSELR NWFQANASPE
201: VAATIRIIYG GSVSGANCKE LAAKPDVDGF LVGGASLKPE FIDIIKSAEV KKNC

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.