Factsheet for VIT_06s0004g04800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005490.2.1	Tomato	plastid	86.61	85.6
KRH23071	Soybean	cytosol, nucleus	70.08	83.96
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	83.86	83.86
GSMUA_Achr5P28700_001	Banana	cytosol	83.07	83.07
KRH10260	Soybean	nucleus	82.68	83.0
Zm00001d012407_P004	Maize	cytosol	82.68	82.03
KXG33676	Sorghum	cytosol, plastid	82.28	81.64
Os01t0841600-01	Rice	cytosol	81.89	81.57
GSMUA_Achr11P...	Banana	plasma membrane	81.5	81.5
TraesCS3A01G359400.1	Wheat	golgi	81.5	80.86
TraesCS3B01G392000.1	Wheat	cytosol	77.17	79.35
TraesCS3D01G073000.1	Wheat	golgi	76.77	77.08
HORVU3Hr1G013350.1	Barley	extracellular, plastid	76.38	63.61
GSMUA_AchrUn_...	Banana	cytosol	57.87	63.36
Zm00001d009835_P001	Maize	cytosol	31.5	61.54
VIT_03s0038g01780.t01	Wine grape	plastid	60.24	47.22
Zm00001d029307_P001	Maize	cytosol	28.74	42.44

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	EntrezGene:100248352	wikigene:100248352
MapMan:2.1.1.3	MapMan:3.1.2.1	Gene3D:3.20.20.70	EMBL:AM441846	InterPro:Aldolase_TIM	ProteinID:CAN67342
ProteinID:CAN67342.1	ProteinID:CBI16125	ProteinID:CBI16125.3	UniProt:D7SKE9	EMBL:FN594951	GO:GO:0003674
GO:GO:0003824	GO:GO:0004807	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005975	GO:GO:0006091	GO:GO:0006094	GO:GO:0006096	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0019563
GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785	EntrezGene:LOC100248352	wikigene:LOC100248352	HAMAP:MF_00147_B
PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF9	SUPFAM:SSF51351
TIGR:TC59423	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS
UniParc:UPI00015C75FC	ArrayExpress:VIT_06s0004g04800	EnsemblPlantsGene:VIT_06s0004g04800	EnsemblPlants:VIT_06s0004g04800.t01	RefSeq:XP_002283671	RefSeq:XP_002283671.1
RefSeq:XP_003632188	RefSeq:XP_003632188.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:5717893..5725059

Molecular Weight (calculated)

27349.9 Da

IEP (calculated)

5.169

GRAVY (calculated)

0.118

Length

254 amino acids

Sequence
(BLAST)

001: MGRKFFIGGN WKCNGTVEEV KKIVTVLNEA EVPSEDIVEV VVSPPFVFLP LVKSLLRSDF QVAAQNCWIR RGGAFTGEIS AEMLVNLGIP WVILGHSERR
101: SLLAESNEFV GDKVAYALSQ GLKVIACVGE TLEQRESGST MAVVAAQTKA IAEKVSSWDN IVLAYEPVWA IGTGKVATPA QAQEVHCELR KWLHDNAGDE
201: VAASTRIIYG GSVNGANCKE LTTQLDVDGF LVGGASLKPE FIDIIKSATV KKSA

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.