Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH10260 Soybean nucleus 99.06 83.0
VIT_06s0004g04800.t01 Wine grape cytosol 83.96 70.08
GSMUA_Achr5P28700_001 Banana cytosol 82.08 68.5
GSMUA_Achr11P... Banana plasma membrane 81.6 68.11
KXG33676 Sorghum cytosol, plastid 81.6 67.58
Os01t0841600-01 Rice cytosol 80.66 67.06
Solyc06g005490.2.1 Tomato plastid 81.13 66.93
Zm00001d012407_P004 Maize cytosol 80.66 66.8
TraesCS3A01G359400.1 Wheat golgi 80.19 66.41
TraesCS3D01G073000.1 Wheat golgi 77.83 65.22
TraesCS3B01G392000.1 Wheat cytosol 75.47 64.78
HORVU3Hr1G013350.1 Barley extracellular, plastid 77.83 54.1
GSMUA_AchrUn_... Banana cytosol 52.36 47.84
KRH67765 Soybean extracellular, nucleus, plastid 59.91 41.1
KRH32560 Soybean nucleus, plastid 58.49 40.79
KRG96044 Soybean nucleus 59.43 40.78
Zm00001d009835_P001 Maize cytosol 25.0 40.77
KRH19958 Soybean plastid 58.49 40.66
Zm00001d029307_P001 Maize cytosol 22.17 27.33
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1MapMan:2.1.1.3MapMan:3.1.2.1
Gene3D:3.20.20.70UniProt:A0A0R0HAA6EMBL:ACUP02008456InterPro:Aldolase_TIMEnsemblPlantsGene:GLYMA_13G3362002GO:GO:0003674
GO:GO:0003824GO:GO:0004807GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005975GO:GO:0006091GO:GO:0006094GO:GO:0006096GO:GO:0006139
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0019563
GO:GO:0046166InterPro:IPR000652InterPro:IPR013785EnsemblPlants:KRH23071ProteinID:KRH23071ProteinID:KRH23071.1
HAMAP:MF_00147_BPFAM:PF00121ScanProsite:PS00171PFscan:PS51440PANTHER:PTHR21139PANTHER:PTHR21139:SF9
MetaCyc:PWY-1042MetaCyc:PWY-5484MetaCyc:PWY-6142MetaCyc:PWY-7003SUPFAM:SSF51351TIGRFAMs:TIGR00419
InterPro:TIM_sfInterPro:TrioseP_Isoase_bac/eukInterPro:Triosephosphate_isomeraseInterPro:Triosephosphate_isomerase_ASUniParc:UPI0006EDCC02SEG:seg
Description
hypothetical protein
Coordinates
chr13:+:42957851..42960475
Molecular Weight (calculated)
23048.6 Da
IEP (calculated)
6.517
GRAVY (calculated)
0.025
Length
212 amino acids
Sequence
(BLAST)
001: MGRKFFVGGN WKCNGTTEEV KKIVTTLNEA KVPGEDVVEV VVSPPFVFLP FVKSLLRPDF HVSAQNCWVR KGGAYTGEVS AEMLVNLGIP WVIIGHSERR
101: QLLNESNEFV GDKVAYALQQ GLKVIACIGE TLEQREAGTT TAVVAEQTKA IAAKISNWDN VVLAYEPVWA IGTGKVATPA QAQEVHADLR KWVHDNVSAE
201: VAASVRIIYG GS
Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)
001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
Arabidopsis Description
CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.