CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96044	Soybean	nucleus	97.41	97.41
KRH32560	Soybean	nucleus, plastid	81.88	83.22
KRH19958	Soybean	plastid	78.96	80.0
CDX99612	Canola	plastid	79.61	78.85
Bra030316.1-P	Field mustard	plastid	78.96	78.21
CDY15911	Canola	plastid	78.96	78.21
AT2G21170.3	Thale cress	plastid	79.29	77.78
Solyc10g054870.1.1	Tomato	plastid	77.99	77.24
CDY13836	Canola	plastid	79.29	76.56
VIT_03s0038g01780.t01	Wine grape	plastid	80.26	76.54
PGSC0003DMT400004042	Potato	cytosol, plastid	80.58	76.38
Solyc01g111120.2.1	Tomato	plastid	80.58	76.38
PGSC0003DMT400011335	Potato	plastid	78.64	76.18
Bra031167.1-P	Field mustard	plastid	78.64	75.94
CDX82002	Canola	plastid	78.32	75.62
GSMUA_Achr9P24140_001	Banana	plastid	74.11	75.58
GSMUA_Achr3P26710_001	Banana	plastid	73.79	73.31
Zm00001d006221_P001	Maize	plastid	69.58	72.15
TraesCS5A01G324200.1	Wheat	plastid	69.9	71.76
Os09t0535000-02	Rice	extracellular	70.23	71.38
TraesCS5B01G324800.1	Wheat	plastid	68.61	70.9
TraesCS5D01G331100.1	Wheat	plastid	68.61	70.9
HORVU5Hr1G082630.5	Barley	plastid	68.93	70.53
EER99254	Sorghum	plastid	68.93	70.07
Zm00001d021310_P001	Maize	extracellular	68.28	69.41
KRH10260	Soybean	nucleus	50.49	61.66
KRH23071	Soybean	cytosol, nucleus	41.1	59.91

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:100799358
MapMan:3.12.3	Gene3D:3.20.20.70	EMBL:ACUP02002080	InterPro:Aldolase_TIM	EMBL:BT093540	UniProt:C6T7V6
EnsemblPlantsGene:GLYMA_03G185800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006091	GO:GO:0006094
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0019563	GO:GO:0046166	InterPro:IPR000652	InterPro:IPR013785	EnsemblPlants:KRH67765
ProteinID:KRH67765	ProteinID:KRH67765.1	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7003
SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS
UniParc:UPI0001B15CE4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:39757051..39763160

Molecular Weight (calculated)

33125.5 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.061

Length

309 amino acids

Sequence
(BLAST)

001: MAATSTSLAS QLYIGLRRPC LKLDSFNSQS FSLFDPNLRL SLSPPKPSRA VIAMAGTGKF FVGGNWKCNG TKDSISKLVA DLNNAKLEPD VDVVVAPPFL
101: YIDQVKNSLT ERIEISAQNS WVGKGGAFTG EISAEQLKDL GCKWVVLGHS ERRHVIGEND EFIGKKAAYA LSQGLGVIAC IGELLEEREA GKTFDVCFQQ
201: LKAYADAVAS WDNIVIAYEP VWAIGTGKVA TPQQAQEVHV AVRDWLKKNV SDEVASKTRI IYGGSVNGGN SAELAKQEDI DGFLVGGASL KGPEFATIVN
301: SVTSKKVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.