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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030316.1-P Field mustard plastid 90.16 91.03
CDY15911 Canola plastid 90.16 91.03
CDX99612 Canola plastid 89.84 90.71
CDY13836 Canola plastid 91.43 90.0
Bra031167.1-P Field mustard plastid 91.11 89.69
CDX82002 Canola plastid 91.11 89.69
KRH19958 Soybean plastid 77.78 80.33
KRH32560 Soybean nucleus, plastid 77.46 80.26
KRG96044 Soybean nucleus 78.1 79.61
KRH67765 Soybean extracellular, nucleus, plastid 77.78 79.29
Solyc10g054870.1.1 Tomato plastid 77.46 78.21
PGSC0003DMT400011335 Potato plastid 78.41 77.43
Solyc01g111120.2.1 Tomato plastid 78.41 75.77
PGSC0003DMT400004042 Potato cytosol, plastid 77.78 75.15
VIT_03s0038g01780.t01 Wine grape plastid 75.56 73.46
GSMUA_Achr9P24140_001 Banana plastid 70.48 73.27
TraesCS5D01G331100.1 Wheat plastid 68.25 71.91
TraesCS5B01G324800.1 Wheat plastid 67.94 71.57
TraesCS5A01G324200.1 Wheat plastid 67.94 71.1
HORVU5Hr1G082630.5 Barley plastid 67.94 70.86
GSMUA_Achr3P26710_001 Banana plastid 69.84 70.74
Zm00001d006221_P001 Maize plastid 66.67 70.47
Os09t0535000-02 Rice extracellular 66.67 69.08
EER99254 Sorghum plastid 66.03 68.42
Zm00001d021310_P001 Maize extracellular 65.08 67.43
AT3G55440.1 Thale cress cytosol 49.21 61.02
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1MapMan:1.2.4MapMan:3.12.3
Gene3D:3.20.20.70PDB:4OHQEntrezGene:816652UniProt:A0A178VN28ProteinID:AAD29799.1ProteinID:AEC07131.1
EMBL:AF247559EMBL:AF378898ProteinID:ANM61768.1ArrayExpress:AT2G21170EnsemblPlantsGene:AT2G21170RefSeq:AT2G21170
TAIR:AT2G21170RefSeq:AT2G21170-TAIR-GEnsemblPlants:AT2G21170.3EMBL:AY052748EMBL:AY087893InterPro:Aldolase_TIM
GO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0004807GO:GO:0005575GO:GO:0005576
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005975
GO:GO:0006091GO:GO:0006094GO:GO:0006096GO:GO:0006139GO:GO:0006629GO:GO:0006642
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009658GO:GO:0009941GO:GO:0009987
GO:GO:0015979GO:GO:0016043GO:GO:0016853GO:GO:0019253GO:GO:0019563GO:GO:0032504
GO:GO:0046166GO:GO:0048046GO:GO:0080022InterPro:IPR000652InterPro:IPR013785HAMAP:MF_00147_B
RefSeq:NP_001323967.1RefSeq:NP_179713.1ProteinID:OAP07900.1PFAM:PF00121ScanProsite:PS00171PFscan:PS51440
PANTHER:PTHR21139PANTHER:PTHR21139:SF15UniProt:Q9SKP6SUPFAM:SSF51351TIGRFAMs:TIGR00419Symbol:TIM
InterPro:TIM_sfInterPro:TrioseP_Isoase_bac/eukInterPro:Triosephosphate_isomeraseInterPro:Triosephosphate_isomerase_ASUniParc:UPI0000000AC9SEG:seg
Description
TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
Coordinates
chr2:-:9070754..9074470
Molecular Weight (calculated)
33347.5 Da
IEP (calculated)
7.984
GRAVY (calculated)
-0.065
Length
315 amino acids
Sequence
(BLAST)
001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.