Factsheet for Zm00001d021310_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
extracellular: 22192489
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99254	Sorghum	plastid	94.74	94.74
Zm00001d006221_P001	Maize	plastid	88.49	90.27
Os09t0535000-02	Rice	extracellular	87.17	87.17
TraesCS5D01G331100.1	Wheat	plastid	79.93	81.27
TraesCS5B01G324800.1	Wheat	plastid	79.93	81.27
HORVU5Hr1G082630.5	Barley	plastid	80.59	81.13
TraesCS5A01G324200.1	Wheat	plastid	80.26	81.06
GSMUA_Achr9P24140_001	Banana	plastid	74.34	74.59
KRH19958	Soybean	plastid	71.71	71.48
GSMUA_Achr3P26710_001	Banana	plastid	73.03	71.38
Solyc10g054870.1.1	Tomato	plastid	73.03	71.15
KRH32560	Soybean	nucleus, plastid	70.72	70.72
PGSC0003DMT400011335	Potato	plastid	72.7	69.28
KRG96044	Soybean	nucleus	69.74	68.61
KRH67765	Soybean	extracellular, nucleus, plastid	69.41	68.28
CDY15911	Canola	plastid	69.41	67.63
CDX99612	Canola	plastid	69.41	67.63
Solyc01g111120.2.1	Tomato	plastid	72.37	67.48
Bra030316.1-P	Field mustard	plastid	69.08	67.31
PGSC0003DMT400004042	Potato	cytosol, plastid	72.04	67.18
VIT_03s0038g01780.t01	Wine grape	plastid	70.39	66.05
CDY13836	Canola	plastid	69.08	65.62
Zm00001d040375_P001	Maize	cytosol	23.68	65.45
CDX82002	Canola	plastid	68.75	65.31
AT2G21170.3	Thale cress	plastid	67.43	65.08
Bra031167.1-P	Field mustard	plastid	68.42	65.0
Zm00001d008619_P001	Maize	plastid	50.99	62.0
Zm00001d039865_P002	Maize	cytosol	52.3	61.39
Zm00001d012407_P004	Maize	cytosol	51.32	60.94
Zm00001d009835_P001	Maize	cytosol	21.71	50.77
Zm00001d029307_P001	Maize	cytosol	19.41	34.3
Zm00001d030216_P001	Maize	mitochondrion	27.3	32.05

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:1.2.4	EntrezGene:100191222
MapMan:3.12.3	Gene3D:3.20.20.70	InterPro:Aldolase_TIM	UniProt:B4FTJ0	EMBL:BT040428	EMBL:BT087346
GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005975	GO:GO:0006091	GO:GO:0006096
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016853	InterPro:IPR000652	InterPro:IPR013785	HAMAP:MF_00147_B	ProteinID:ONM56814.1	PFAM:PF00121
ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139	PANTHER:PTHR21139:SF15	SUPFAM:SSF51351	TIGRFAMs:TIGR00419
InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI00017B77DA	EnsemblPlantsGene:Zm00001d021310
EnsemblPlants:Zm00001d021310_P001	EnsemblPlants:Zm00001d021310_T001	SEG:seg	:	:	:

Description

Triosephosphate isomerase

Coordinates

chr7:-:148461116..148465035

Molecular Weight (calculated)

32422.6 Da

IEP (calculated)

6.519

GRAVY (calculated)

0.034

Length

304 amino acids

Sequence
(BLAST)

001: MAAAPSSLVS SHLSRLADLR RAAAPATPTV PQQLRVGFSR RRAQRVVAMA GSGKFFVGGN WKCNGTKDSV SKLVSELNAA TLETDVDVVV APPFIYIDQV
101: KNSLTGRIEV SAQNVWIGKG GAYTGEISAE QLVDIGCQWV ILGHSERRHI IGENDEFIGK KAAYALSQNV KVIACIGELL EEREAGKTFE VCFEQMKAFA
201: DSISNWADVV IAYEPVWAIG TGKVATPEQA QEVHAAVRDW LTTNISPDVA SSTRIIYGGS VNAANCAELA KKEDIDGFLV GGASLKAPDF ATIINSVTAK
301: KVAA

Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)

001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA

Arabidopsis Description

TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.