Factsheet for Zm00001d008619_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039865_P002	Maize	cytosol	95.2	91.89
Os01t0147900-01	Rice	extracellular	87.2	86.17
TraesCS3A01G073300.1	Wheat	cytosol, unclear	86.0	84.98
TraesCS3D01G073000.1	Wheat	golgi	86.0	84.98
TraesCS3B01G087400.1	Wheat	cytosol, golgi, unclear	85.2	84.19
Zm00001d040375_P001	Maize	cytosol	36.4	82.73
Zm00001d012407_P004	Maize	cytosol	80.8	78.91
HORVU3Hr1G013350.1	Barley	extracellular, plastid	86.8	71.15
Zm00001d009835_P001	Maize	cytosol	32.4	62.31
Zm00001d006221_P001	Maize	plastid	62.0	52.01
Zm00001d021310_P001	Maize	extracellular	62.0	50.99
Zm00001d029307_P001	Maize	cytosol	28.8	41.86
Zm00001d030216_P001	Maize	mitochondrion	41.2	39.77

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	ProteinID:AQK90304.1	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016853	InterPro:IPR000652	InterPro:IPR013785
UniProt:K7UUB0	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440	PANTHER:PTHR21139
PANTHER:PTHR21139:SF16	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase
InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0001CA9826	EnsemblPlantsGene:Zm00001d008619	EnsemblPlants:Zm00001d008619_P001	EnsemblPlants:Zm00001d008619_T001	SEG:seg

Description

triose phosphate isomerase3 triose phosphate isomerase3

Coordinates

chr8:-:14786063..14789977

Molecular Weight (calculated)

26732.0 Da

IEP (calculated)

4.842

GRAVY (calculated)

0.104

Length

250 amino acids

Sequence
(BLAST)

001: MGRKFFVGGN WKCNGTTDQV EKIVKTLNEG NVPSSDVVEV VVSPPYVFLP VVKSQLRQEF QVAAQNCWVK KGGAFTGEIS AEMLVNLGVP WVILGHSERR
101: ALLGESNEFV GDKVAFALSQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IAEKIKDWSN VVLAYEPVWA IGTGKVATPA QAQEVHASLR DWVKINVSPE
201: VSESTRIIYG GSVTAANCKE LAAQPDVDGF LVGGASLKPE FIDIINAAAV

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.