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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 16758444
msms PMID: 16758444 doi
B Granvogl, V Reisinger, LA Eichacker
Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G324800.1 Wheat plastid 94.7 95.65
TraesCS5D01G331100.1 Wheat plastid 93.71 94.65
TraesCS5A01G324200.1 Wheat plastid 94.04 94.35
Zm00001d006221_P001 Maize plastid 81.79 82.89
Os09t0535000-02 Rice extracellular 83.11 82.57
EER99254 Sorghum plastid 82.12 81.58
Zm00001d021310_P001 Maize extracellular 81.13 80.59
GSMUA_Achr9P24140_001 Banana plastid 75.5 75.25
GSMUA_Achr3P26710_001 Banana plastid 74.83 72.67
KRH32560 Soybean nucleus, plastid 72.52 72.04
Solyc10g054870.1.1 Tomato plastid 73.51 71.15
KRH19958 Soybean plastid 71.85 71.15
CDX99612 Canola plastid 72.52 70.19
PGSC0003DMT400011335 Potato plastid 73.84 69.91
CDY15911 Canola plastid 72.19 69.87
Bra030316.1-P Field mustard plastid 72.19 69.87
KRG96044 Soybean nucleus 70.53 68.93
KRH67765 Soybean extracellular, nucleus, plastid 70.53 68.93
Solyc01g111120.2.1 Tomato plastid 73.84 68.4
VIT_03s0038g01780.t01 Wine grape plastid 73.18 68.21
PGSC0003DMT400004042 Potato cytosol, plastid 73.51 68.1
AT2G21170.3 Thale cress plastid 70.86 67.94
CDY13836 Canola plastid 71.85 67.81
CDX82002 Canola plastid 71.85 67.81
Bra031167.1-P Field mustard plastid 71.85 67.81
HORVU3Hr1G013350.1 Barley extracellular, plastid 52.65 52.13
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1MapMan:1.2.4MapMan:3.12.3
Gene3D:3.20.20.70EMBL:AK367130EMBL:AK376814InterPro:Aldolase_TIMUniProt:F2DTB2GO:GO:0000003
GO:GO:0003674GO:GO:0003824GO:GO:0004807GO:GO:0005575GO:GO:0005576GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005829GO:GO:0005975GO:GO:0006091
GO:GO:0006096GO:GO:0006139GO:GO:0006629GO:GO:0006642GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009570
GO:GO:0009579GO:GO:0009658GO:GO:0009941GO:GO:0009987GO:GO:0016043GO:GO:0019563
GO:GO:0032504GO:GO:0046166GO:GO:0048046GO:GO:0080022EnsemblPlantsGene:HORVU5Hr1G082630EnsemblPlants:HORVU5Hr1G082630.5
InterPro:IPR000652InterPro:IPR013785HAMAP:MF_00147_BPFAM:PF00121ScanProsite:PS00171PFscan:PS51440
PANTHER:PTHR21139PANTHER:PTHR21139:SF15SUPFAM:SSF51351TIGRFAMs:TIGR00419InterPro:TIM_sfInterPro:TrioseP_Isoase_bac/euk
InterPro:Triosephosphate_isomeraseInterPro:Triosephosphate_isomerase_ASUniParc:UPI0002006F7DSEG:seg::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DTB2]
Coordinates
chrchr5H:+:568044993..568048951
Molecular Weight (calculated)
32301.5 Da
IEP (calculated)
7.471
GRAVY (calculated)
-0.078
Length
302 amino acids
Sequence
(BLAST)
001: MAAPSSLASS HLSRLAAAGA PAPQPHHQNH QLRLGCSRRR AQRLVAMAGS GKFFVGGNWK CNGTKESISK LVSDLNAATL ESDVDVVVAP PFIYIDQVKS
101: SLTDRIEVSA QNTWIGKGGA FTGEISAEQL VDIGCQWVIL GHSERRHVIG EDDQFIGKKA AYALSQNLKV MACIGELLEE REAGKTFDVC FKQMKAFADN
201: ITDWKNVVIA YEPVWAIGTG KVASPEQAQE VHAAVRDWLK TNVSADVAST VRIIYGGSVN AANCAELAKK EDIDGFLVGG ASLKGPDFAT ICNSVTSKKV
301: TA
Best Arabidopsis Sequence Match ( AT2G21170.1 )
(BLAST)
001: MAATSLTAPP SFSGLRRISP KLDAAAVSSH QSFFHRVNSS TRLVSSSSSS HRSPRGVVAM AGSGKFFVGG NWKCNGTKDS IAKLISDLNS ATLEADVDVV
101: VSPPFVYIDQ VKSSLTDRID ISGQNSWVGK GGAFTGEISV EQLKDLGCKW VILGHSERRH VIGEKDEFIG KKAAYALSEG LGVIACIGEK LEEREAGKTF
201: DVCFAQLKAF ADAVPSWDNI VVAYEPVWAI GTGKVASPQQ AQEVHVAVRG WLKKNVSEEV ASKTRIIYGG SVNGGNSAEL AKEEDIDGFL VGGASLKGPE
301: FATIVNSVTS KKVAA
Arabidopsis Description
TIMTIM [Source:UniProtKB/TrEMBL;Acc:A0A178VN28]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.