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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 nucleus: 21132161
extracellular: 22945350
mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 25806999 doi
AH Kamal, S Komatsu
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 22945350 doi
C Liao, F Hochholdinger, C Li
Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH23071 Soybean cytosol, nucleus 83.0 99.06
GSMUA_Achr5P28700_001 Banana cytosol 83.0 82.68
VIT_06s0004g04800.t01 Wine grape cytosol 83.0 82.68
GSMUA_Achr11P... Banana plasma membrane 82.61 82.28
KXG33676 Sorghum cytosol, plastid 81.82 80.86
TraesCS3A01G359400.1 Wheat golgi 81.42 80.47
Zm00001d012407_P004 Maize cytosol 81.42 80.47
Os01t0841600-01 Rice cytosol 81.03 80.39
Solyc06g005490.2.1 Tomato plastid 81.42 80.16
TraesCS3D01G073000.1 Wheat golgi 78.66 78.66
TraesCS3B01G392000.1 Wheat cytosol 76.68 78.54
HORVU3Hr1G013350.1 Barley extracellular, plastid 77.87 64.59
GSMUA_AchrUn_... Banana cytosol 57.71 62.93
Zm00001d009835_P001 Maize cytosol 30.83 60.0
KRH67765 Soybean extracellular, nucleus, plastid 61.66 50.49
KRG96044 Soybean nucleus 61.26 50.16
KRH32560 Soybean nucleus, plastid 60.08 50.0
KRH19958 Soybean plastid 60.08 49.84
Zm00001d029307_P001 Maize cytosol 27.67 40.7
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1EntrezGene:100796274MapMan:2.1.1.3
MapMan:3.1.2.1Gene3D:3.20.20.70UniProt:A0A0R0G6T3EMBL:ACUP02009128InterPro:Aldolase_TIMEnsemblPlantsGene:GLYMA_15G038100
GO:GO:0003674GO:GO:0003824GO:GO:0003988GO:GO:0004807GO:GO:0005975GO:GO:0006091
GO:GO:0006096GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016740GO:GO:0016746GO:GO:0016853InterPro:IPR000652InterPro:IPR013785
EnsemblPlants:KRH10260ProteinID:KRH10260ProteinID:KRH10260.1HAMAP:MF_00147_BPFAM:PF00121ScanProsite:PS00171
PFscan:PS51440PANTHER:PTHR21139PANTHER:PTHR21139:SF9MetaCyc:PWY-1042MetaCyc:PWY-5484MetaCyc:PWY-6142
MetaCyc:PWY-7003SUPFAM:SSF51351TIGRFAMs:TIGR00419InterPro:TIM_sfInterPro:TrioseP_Isoase_bac/eukInterPro:Triosephosphate_isomerase
InterPro:Triosephosphate_isomerase_ASUniParc:UPI0001B8376BSEG:seg:::
Description
hypothetical protein
Coordinates
chr15:-:3010448..3013773
Molecular Weight (calculated)
27199.6 Da
IEP (calculated)
6.136
GRAVY (calculated)
0.021
Length
253 amino acids
Sequence
(BLAST)
001: MGRKFFVGGN WKCNGTTEEV KKIVTTLNEA KVPGEDVVEV VVSPPFVFLP VVKSLLRPDF HVSAQNCWVR KGGAYTGEVS AEMLVNLGIP WVIIGHSERR
101: QLLNESNEFV GDKVAYALQQ GLKVIACIGE TLEQREAGTT TAVVSEQTKA IAAKISNWDN VVLAYEPVWA IGTGKVATPA QAQEVHADLR KWVHDNVSAE
201: VAASVRIIYG GSVNGGNCKE LAAQPDVDGF LVGGASLKPE FVDIINAATV KKN
Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)
001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
Arabidopsis Description
CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.