Factsheet for GSMUA_Achr11P24370_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
peroxisome 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P28700_001	Banana	cytosol	92.91	92.91
PGSC0003DMT400071330	Potato	cytosol, extracellular	85.83	85.83
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	84.25	84.25
CDX76094	Canola	cytosol	83.46	83.46
CDY02939	Canola	cytosol	83.07	83.4
Bra014743.1-P	Field mustard	cytosol	82.68	82.68
CDX76095	Canola	cytosol	82.68	82.68
KRH10260	Soybean	nucleus	82.28	82.61
Bra014744.1-P	Field mustard	cytosol	82.28	82.28
CDY02937	Canola	cytosol	82.28	82.28
KRH23071	Soybean	cytosol, nucleus	68.11	81.6
Os01t0841600-01	Rice	cytosol	81.89	81.57
AT3G55440.1	Thale cress	cytosol	81.5	81.5
VIT_06s0004g04800.t01	Wine grape	cytosol	81.5	81.5
GSMUA_Achr9P03330_001	Banana	cytosol	83.86	81.3
TraesCS3D01G073000.1	Wheat	golgi	80.71	81.03
Solyc06g005490.2.1	Tomato	plastid	81.5	80.54
Zm00001d012407_P004	Maize	cytosol	81.1	80.47
KXG33676	Sorghum	cytosol, plastid	80.71	80.08
Solyc04g011510.2.1	Tomato	plastid	81.5	79.92
TraesCS3A01G359400.1	Wheat	golgi	79.13	78.52
TraesCS3B01G392000.1	Wheat	cytosol	75.59	77.73
GSMUA_AchrUn_...	Banana	cytosol	64.96	71.12
HORVU3Hr1G013350.1	Barley	extracellular, plastid	79.53	66.23
Zm00001d009835_P001	Maize	cytosol	33.07	64.62
CDY40220	Canola	cytosol	53.54	60.99
Bra007163.1-P	Field mustard	cytosol	41.34	54.69
GSMUA_Achr9P24140_001	Banana	plastid	62.2	52.15
GSMUA_Achr3P26710_001	Banana	plastid	61.42	50.16
Bra003214.1-P	Field mustard	cytosol	38.98	49.25
CDY53690	Canola	cytosol	38.98	49.25
CDY41233	Canola	cytosol, extracellular	31.89	47.37
Zm00001d029307_P001	Maize	cytosol	29.92	44.19

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807	GO:GO:0005975
GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr11G24370_001	EnsemblPlants:GSMUA_Achr11P24370_001	EnsemblPlants:GSMUA_Achr11T24370_001	InterPro:IPR000652
InterPro:IPR013785	UniProt:M0RV17	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF16	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk
InterPro:Triosephosphate_isomerase	InterPro:Triosephosphate_isomerase_AS	UniParc:UPI000294C17A	SEG:seg	:	:

Description

Triosephosphate isomerase, cytosolic [Source:GMGC_GENE;Acc:GSMUA_Achr11G24370_001]

Coordinates

chr11:-:23947535..23953481

Molecular Weight (calculated)

27138.6 Da

IEP (calculated)

5.787

GRAVY (calculated)

0.149

Length

254 amino acids

Sequence
(BLAST)

001: MARKFFVGGN WKCNGTSEEV KKIVSILNDG KVASADVVDV VVSPSFVFLP LVKSSLRPEF HVAAQNCWVK KGGAYTGEIS AEMLVNLDIP WVILGHSERR
101: LLLSESNEFV GDKVAYALSK GLKVIACVGE TLEQRESGTT MDVVAAQTKA IAERISDWTN VVVAYEPVWA IGTGKVATPA QAQEVHLELR KWLQTNVSAE
201: VAASTRIIYG GSVSGANCKE LAAQPDVDGF LVGGASLKPE FVDIINAATV KSSA

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.