CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 16662753

msms PMID: 16662753 doi

ES Wurtele, SS Thayer, EE Conn

Department of Biochemistry and Biophysics, University of California, Davis, California 95616.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012407_P004	Maize	cytosol	97.27	97.27
Os01t0841600-01	Rice	cytosol	92.97	93.33
TraesCS3B01G392000.1	Wheat	cytosol	89.06	92.31
TraesCS3A01G359400.1	Wheat	golgi	92.19	92.19
GSMUA_Achr5P28700_001	Banana	cytosol	82.03	82.68
VIT_06s0004g04800.t01	Wine grape	cytosol	81.64	82.28
GSMUA_Achr9P03330_001	Banana	cytosol	83.98	82.06
KRH10260	Soybean	nucleus	80.86	81.82
KRH23071	Soybean	cytosol, nucleus	67.58	81.6
GSMUA_Achr11P...	Banana	plasma membrane	80.08	80.71
Solyc06g005490.2.1	Tomato	plastid	80.86	80.54
CDY02939	Canola	cytosol	78.91	79.84
AT3G55440.1	Thale cress	cytosol	78.91	79.53
CDX76095	Canola	cytosol	78.91	79.53
CDX76094	Canola	cytosol	78.91	79.53
Bra014743.1-P	Field mustard	cytosol	78.91	79.53
CDY02937	Canola	cytosol	78.52	79.13
Bra014744.1-P	Field mustard	cytosol	78.12	78.74
VIT_13s0019g01090.t01	Wine grape	cytosol, endoplasmic reticulum	78.12	78.74
PGSC0003DMT400071330	Potato	cytosol, extracellular	77.73	78.35
Solyc04g011510.2.1	Tomato	plastid	73.83	72.97
Zm00001d009835_P001	Maize	cytosol	35.55	70.0
EES00320	Sorghum	cytosol, plastid	80.86	67.87
GSMUA_AchrUn_...	Banana	cytosol	56.25	62.07
CDY40220	Canola	cytosol	52.73	60.54
Bra007163.1-P	Field mustard	cytosol	41.02	54.69
EER99254	Sorghum	plastid	61.72	51.97
Zm00001d029307_P001	Maize	cytosol	32.81	48.84
CDY53690	Canola	cytosol	37.5	47.76
Bra003214.1-P	Field mustard	cytosol	37.5	47.76
CDY41233	Canola	cytosol, extracellular	30.86	46.2

Protein Annotations

KEGG:00010+5.3.1.1	KEGG:00051+5.3.1.1	KEGG:00562+5.3.1.1	KEGG:00710+5.3.1.1	MapMan:2.1.1.3	MapMan:3.1.2.1
Gene3D:3.20.20.70	UniProt:A0A1B6Q6Y7	InterPro:Aldolase_TIM	GO:GO:0003674	GO:GO:0003824	GO:GO:0004807
GO:GO:0005975	GO:GO:0006091	GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000652	InterPro:IPR013785	EnsemblPlants:KXG33676
ProteinID:KXG33676	ProteinID:KXG33676.1	HAMAP:MF_00147_B	PFAM:PF00121	ScanProsite:PS00171	PFscan:PS51440
PANTHER:PTHR21139	PANTHER:PTHR21139:SF14	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6142	MetaCyc:PWY-7003
EnsemblPlantsGene:SORBI_3003G352300	SUPFAM:SSF51351	TIGRFAMs:TIGR00419	InterPro:TIM_sf	InterPro:TrioseP_Isoase_bac/euk	InterPro:Triosephosphate_isomerase
InterPro:Triosephosphate_isomerase_AS	UniParc:UPI0001C80AD6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:67131159..67134906

Molecular Weight (calculated)

27321.8 Da

IEP (calculated)

5.141

GRAVY (calculated)

0.144

Length

256 amino acids

Sequence
(BLAST)

001: MASRKFFVGG NWKCNGTGED VKKIVTVLNE AEVPTEDVVE VVVSPPFVFL QQVKGLLRLD FAVAAQNCWV RKGGAFTGEI SAEMLVNLQV PWVILGHSER
101: RALLGESSDF VADKVAYALT QGLKVIACIG ETLEQREAGT TMDVVAAQTK AISEKISDWT NVVLAYEPVW AIGTGKVATP AQAQEVHDGL RKWLHSNVSP
201: AVAESTRIIY GGSVNGANCK ELAAQADVDG FLVGGASLKP EFVDIIKSAT VKSSCA

Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)

001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA

Arabidopsis Description

CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.