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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, plastid
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d039865_P002 Maize cytosol 80.0 94.21
Os01t0147900-01 Rice extracellular 73.11 88.14
TraesCS3A01G073300.1 Wheat cytosol, unclear 72.79 87.75
TraesCS3D01G073000.1 Wheat golgi 72.79 87.75
TraesCS3B01G087400.1 Wheat cytosol, golgi, unclear 72.46 87.35
Zm00001d040375_P001 Maize cytosol 31.48 87.27
KXG33676 Sorghum cytosol, plastid 67.87 80.86
HORVU3Hr1G013350.1 Barley extracellular, plastid 74.43 74.43
EER99254 Sorghum plastid 53.44 53.62
Zm00001d030216_P001 Maize mitochondrion 33.77 39.77
Protein Annotations
KEGG:00010+5.3.1.1KEGG:00051+5.3.1.1KEGG:00562+5.3.1.1KEGG:00710+5.3.1.1MapMan:2.1.1.3MapMan:3.1.2.1
Gene3D:3.20.20.70EntrezGene:8060801InterPro:Aldolase_TIMUniProt:C5XQ07EnsemblPlants:EES00320ProteinID:EES00320
ProteinID:EES00320.2GO:GO:0003674GO:GO:0003824GO:GO:0004807GO:GO:0005488GO:GO:0005507
GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005773GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0005975
GO:GO:0006091GO:GO:0006094GO:GO:0006096GO:GO:0006139GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009506GO:GO:0009536GO:GO:0009570
GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009735GO:GO:0009987GO:GO:0010043
GO:GO:0016020GO:GO:0019563GO:GO:0030312GO:GO:0046166GO:GO:0046686GO:GO:0048046
InterPro:IPR000652InterPro:IPR013785HAMAP:MF_00147_BPFAM:PF00121ScanProsite:PS00171PFscan:PS51440
PANTHER:PTHR21139PANTHER:PTHR21139:SF16MetaCyc:PWY-1042MetaCyc:PWY-5484MetaCyc:PWY-6142MetaCyc:PWY-7003
EnsemblPlantsGene:SORBI_3003G072300SUPFAM:SSF51351unigene:Sbi.3908TIGRFAMs:TIGR00419InterPro:TIM_sfInterPro:TrioseP_Isoase_bac/euk
InterPro:Triosephosphate_isomeraseInterPro:Triosephosphate_isomerase_ASUniParc:UPI0009DC8E26RefSeq:XP_002455200.1SEG:seg:
Description
hypothetical protein
Coordinates
chr3:+:6156693..6161687
Molecular Weight (calculated)
32579.1 Da
IEP (calculated)
5.845
GRAVY (calculated)
0.008
Length
305 amino acids
Sequence
(BLAST)
001: MAAEPSTVQV VPAKAELESG RNRQGGEAKS NLEAALLPLL PIRTKSNRRF PEMGRKFFVG GNWKCNGTTD QVEKIVKTLN EGQVPPADVV EVVVSPPYVF
101: LTVVKSLLRP EFHVAAQNCW VKKGGAFTGE VSAEMLVNLG VPWVILGHSE RRALLGESNE FVGDKVAYAL SQGLKVIACV GETLEQREAG STMEVVAAQT
201: KAIAEKISDW SNVVVAYEPV WAIGTGKVAT PAQAQEVHAS LRDWLKINVS PEVAESTRII YGGSVTAANC KELGAQPDVD GFLVGGASLK PEFIDIINAA
301: TVKSA
Best Arabidopsis Sequence Match ( AT3G55440.1 )
(BLAST)
001: MARKFFVGGN WKCNGTAEEV KKIVNTLNEA QVPSQDVVEV VVSPPYVFLP LVKSTLRSDF FVAAQNCWVK KGGAFTGEVS AEMLVNLDIP WVILGHSERR
101: AILNESSEFV GDKVAYALAQ GLKVIACVGE TLEEREAGST MDVVAAQTKA IADRVTNWSN VVIAYEPVWA IGTGKVASPA QAQEVHDELR KWLAKNVSAD
201: VAATTRIIYG GSVNGGNCKE LGGQADVDGF LVGGASLKPE FIDIIKAAEV KKSA
Arabidopsis Description
CTIMCTriosephosphate isomerase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P48491]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.