Factsheet for Solyc02g062680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009620.2.1
Solyc01g009630.2.1
Solyc01g067490.2.1
Solyc01g097050.2.1
Solyc01g102560.2.1
Solyc01g102570.2.1
Solyc01g102590.2.1
Solyc01g102600.2.1
Solyc02g079050.2.1
Solyc03g025880.2.1
Solyc03g061590.2.1
Solyc03g113740.2.1
Solyc05g007750.2.1
Solyc06g043150.2.1
Solyc06g076150.2.1
Solyc07g008340.2.1
Solyc08g066330.1.1
Solyc08g067190.2.1
Solyc08g075360.1.1
Solyc08g076580.2.1
Solyc10g080400.1.1
Solyc12g014320.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18290.1	Solyc08g067190.2.1	AT1G06590.1	20706207
AT2G18290.1	Solyc08g076580.2.1	AT1G32310.1	20706207
AT2G18290.1	Solyc12g014320.1.1	AT1G78770.1	20706207
AT2G18290.1	Solyc05g007750.2.1	AT2G04660.1	20706207
AT2G18290.1	Solyc03g061590.2.1	AT2G20000.1	17944809
AT2G18290.1	Solyc03g061590.2.1	AT2G20000.1	20706207
AT2G18290.1	Solyc01g067490.2.1	AT2G39090.1	20706207
AT2G18290.1	Solyc10g080400.1.1	AT2G42260.1	20706207
AT2G18290.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT2G18290.1	Solyc03g113740.2.1	AT3G48150.1	20706207
AT2G18290.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT2G18290.1	Solyc01g102560.2.1	AT3G56150.1	20706207
AT2G18290.1	Solyc01g102570.2.1	AT3G56150.1	20706207
AT2G18290.1	Solyc01g102590.2.1	AT3G56150.1	20706207
AT2G18290.1	Solyc01g102600.2.1	AT3G56150.1	20706207
AT2G18290.1	Solyc06g076150.2.1	AT3G56150.1	20706207
AT2G18290.1	Solyc10g080400.1.1	AT3G57860.1	20706207
AT2G18290.1	Solyc07g008340.2.1	AT4G19210.1	20706207
AT2G18290.1	Solyc08g075360.1.1	AT4G19210.1	20706207
AT2G18290.1	Solyc02g079050.2.1	AT4G21530.1	20706207
AT2G18290.1	Solyc01g009620.2.1	AT4G25550.1	20706207
AT2G18290.1	Solyc01g009630.2.1	AT4G25550.1	20706207
AT2G18290.1	Solyc03g025880.2.1	AT4G25550.1	20706207
AT2G18290.1	Solyc06g043150.2.1	AT5G13840.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040024	Potato	cytosol	98.95	98.95
VIT_04s0023g01940.t01	Wine grape	cytosol	85.86	85.42
KRH08242	Soybean	cytosol	85.34	84.9
KRH69898	Soybean	cytosol	85.34	84.9
GSMUA_Achr1P03050_001	Banana	cytosol	85.86	84.1
AT2G18290.1	Thale cress	nucleus	83.25	82.81
Bra024475.1-P	Field mustard	cytosol	82.72	82.29
CDY20922	Canola	cytosol	82.72	82.29
CDY29224	Canola	cytosol	82.72	82.29
Os05t0579800-01	Rice	cytosol	79.06	75.12
CDY25160	Canola	nucleus	56.02	74.31
EES19889	Sorghum	cytoskeleton, cytosol, nucleus	78.01	74.13
Zm00001d009440_P001	Maize	cytoskeleton, cytosol, nucleus	77.49	73.63
Zm00001d038881_P001	Maize	cytoskeleton, cytosol, nucleus	74.35	71.72
HORVU1Hr1G091550.1	Barley	cytosol, nucleus	76.44	64.04
HORVU5Hr1G110350.1	Barley	cytosol, nucleus, plastid	29.32	52.34
KRG99106	Soybean	nucleus	29.32	45.9
TraesCS5A01G358300.1	Wheat	nucleus	29.32	37.09
TraesCS6A01G073800.1	Wheat	nucleus	29.32	37.09
TraesCS7A01G155100.1	Wheat	nucleus	29.32	37.09
TraesCS1D01G323600.1	Wheat	nucleus	28.8	36.42
TraesCS3B01G195200.1	Wheat	nucleus	27.75	35.1
KRH49548	Soybean	mitochondrion, plastid	27.75	29.78

Protein Annotations

MapMan:13.3.4.1.1.3.2	Gene3D:2.60.120.260	InterPro:APC10/Doc1	InterPro:APC_su10/DOC_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005680
GO:GO:0006139	GO:GO:0006259	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0008283	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087	GO:GO:0016604
GO:GO:0016740	GO:GO:0019538	GO:GO:0031145	GO:GO:0032875	GO:GO:0032876	GO:GO:0051301
GO:GO:0061630	GO:GO:0070979	GO:GO:1904668	InterPro:Galactose-bd-like_sf	InterPro:IPR004939	InterPro:IPR008979
UniProt:K4B6F6	PFAM:PF03256	PIRSF:PIRSF028841	PFscan:PS51284	PANTHER:PTHR12936	SMART:SM01337
SUPFAM:SSF49785	EnsemblPlantsGene:Solyc02g062680.2	EnsemblPlants:Solyc02g062680.2.1	UniParc:UPI0002768287	SEG:seg	:

Description

Anaphase-promoting complex subunit 10 [Source:Projected from Arabidopsis thaliana (AT2G18290) UniProtKB/Swiss-Prot;Acc:Q9ZPW2]

Coordinates

chr2:-:34403250..34406729

Molecular Weight (calculated)

21438.5 Da

IEP (calculated)

6.688

GRAVY (calculated)

-0.452

Length

191 amino acids

Sequence
(BLAST)

001: MADSSEGEEE GKLTGGSQQL VVDDDLREMG KKAAWSVSSY KPGNGVLSLR DDNLETYWQS DGAQPHLVNV QFQKKVKLQL VVLYVDFKLD ESYTPGKISI
101: RAGDGFHNLK EIKAVELVKP TGWMHISLSG NDPRETFVNT FMLQIGVLSN HLNGRDTHIR QIKVYGPRPN PIPLQPFQFT STEFITYSAV R

Best Arabidopsis Sequence Match ( AT2G18290.1 )
(BLAST)

001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR

Arabidopsis Description

APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.