Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G155100.1 | Wheat | nucleus | 97.35 | 97.35 |
| TraesCS6A01G073800.1 | Wheat | nucleus | 96.03 | 96.03 |
| TraesCS5A01G358300.1 | Wheat | nucleus | 95.36 | 95.36 |
| TraesCS3B01G195200.1 | Wheat | nucleus | 94.04 | 94.04 |
| Solyc02g062680.2.1 | Tomato | cytosol | 36.42 | 28.8 |
| PGSC0003DMT400040024 | Potato | cytosol | 36.42 | 28.8 |
| TraesCS1D01G427200.2 | Wheat | cytosol | 37.09 | 28.72 |
| VIT_04s0023g01940.t01 | Wine grape | cytosol | 35.76 | 28.12 |
| AT2G18290.1 | Thale cress | nucleus | 35.76 | 28.12 |
| KRH69898 | Soybean | cytosol | 35.1 | 27.6 |
| KRH08242 | Soybean | cytosol | 34.44 | 27.08 |
| CDY29224 | Canola | cytosol | 34.44 | 27.08 |
| CDY25160 | Canola | nucleus | 25.83 | 27.08 |
| CDY20922 | Canola | cytosol | 34.44 | 27.08 |
| Bra024475.1-P | Field mustard | cytosol | 34.44 | 27.08 |
| TraesCS6D01G354500.1 | Wheat | cytosol | 35.76 | 26.47 |
| KRG99106 | Soybean | nucleus | 20.53 | 25.41 |
| KRH49548 | Soybean | mitochondrion, plastid | 21.85 | 18.54 |
Protein Annotations
| MapMan:13.3.4.1.1.3.2 | Gene3D:2.60.120.260 | InterPro:APC10/Doc1 | InterPro:APC_su10/DOC_dom | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005680 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010087 | GO:GO:0016604 | GO:GO:0019538 | GO:GO:0031145 | GO:GO:0032875 |
| GO:GO:0032876 | InterPro:Galactose-bd-like_sf | InterPro:IPR004939 | InterPro:IPR008979 | PFAM:PF03256 | PFscan:PS51284 |
| PANTHER:PTHR12936 | SUPFAM:SSF49785 | EnsemblPlantsGene:TraesCS1D01G323600 | EnsemblPlants:TraesCS1D01G323600.1 | : | : |
Description
No Description!
Coordinates
chr1D:+:416148495..416149893
Molecular Weight (calculated)
16897.4 Da
IEP (calculated)
10.612
GRAVY (calculated)
-0.286
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMDLQRPQP LHLGFPDPSS LGWAEQPWRR IRSVHGRSTS GSADHSQRPD GGGYRRGCCS ALRSLHVSSC ASGGQTLLRL RPRGTHIVGG FIFLRSDSVQ
101: PHMVNIQFQK NVLLQLVTLY MHFKLDESYT LSKISIWTGD GFHNLKAIPL F
101: PHMVNIQFQK NVLLQLVTLY MHFKLDESYT LSKISIWTGD GFHNLKAIPL F
001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
Arabidopsis Description
APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.