Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20922 | Canola | cytosol | 83.33 | 62.5 |
| CDY29224 | Canola | cytosol | 83.33 | 62.5 |
| AT2G18290.1 | Thale cress | nucleus | 83.33 | 62.5 |
| KRH08242 | Soybean | cytosol | 76.39 | 57.29 |
| KRH69898 | Soybean | cytosol | 76.39 | 57.29 |
| Solyc02g062680.2.1 | Tomato | cytosol | 74.31 | 56.02 |
| PGSC0003DMT400040024 | Potato | cytosol | 74.31 | 56.02 |
| VIT_04s0023g01940.t01 | Wine grape | cytosol | 72.92 | 54.69 |
| GSMUA_Achr1P03050_001 | Banana | cytosol | 72.22 | 53.33 |
| Os05t0579800-01 | Rice | cytosol | 71.53 | 51.24 |
| EES19889 | Sorghum | cytoskeleton, cytosol, nucleus | 70.83 | 50.75 |
| Zm00001d009440_P001 | Maize | cytoskeleton, cytosol, nucleus | 70.83 | 50.75 |
| Zm00001d038881_P001 | Maize | cytoskeleton, cytosol, nucleus | 66.67 | 48.48 |
| HORVU1Hr1G091550.1 | Barley | cytosol, nucleus | 70.14 | 44.3 |
| HORVU5Hr1G110350.1 | Barley | cytosol, nucleus, plastid | 28.47 | 38.32 |
| KRG99106 | Soybean | nucleus | 28.47 | 33.61 |
| TraesCS1D01G323600.1 | Wheat | nucleus | 27.08 | 25.83 |
| TraesCS6A01G073800.1 | Wheat | nucleus | 27.08 | 25.83 |
| TraesCS7A01G155100.1 | Wheat | nucleus | 27.08 | 25.83 |
| TraesCS5A01G358300.1 | Wheat | nucleus | 26.39 | 25.17 |
| TraesCS3B01G195200.1 | Wheat | nucleus | 25.0 | 23.84 |
| KRH49548 | Soybean | mitochondrion, plastid | 22.92 | 18.54 |
Protein Annotations
| MapMan:13.3.4.1.1.3.2 | Gene3D:2.60.120.260 | GO:A0A078GFA5 | UniProt:A0A078GFA5 | InterPro:APC10/Doc1 | InterPro:APC_su10/DOC_dom |
| EnsemblPlants:CDY25160 | ProteinID:CDY25160 | ProteinID:CDY25160.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005680 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0031145 | EnsemblPlantsGene:GSBRNA2T00029073001 | InterPro:Galactose-bd-like_sf | InterPro:IPR004939 | InterPro:IPR008979 |
| PFAM:PF03256 | PIRSF:PIRSF028841 | PFscan:PS51284 | PANTHER:PTHR12936 | SMART:SM01337 | SUPFAM:SSF49785 |
| UniParc:UPI0004EE2BB7 | : | : | : | : | : |
Description
BnaC07g03470DBnaC07g03470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFA5]
Coordinates
chrLK032169:-:503727..505374
Molecular Weight (calculated)
16248.6 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.224
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKNAAWSVS SCKPGNGVNT LRDDDLETFW QSDGLQPHLI NIQFQKKVRL QLVVLSIRAG DGFHNLKEMK SVELVKPSGW VCVSMSGSDP PDTFVNTFML
101: QISILSNHLN GPRPCVCLFD CRNRIPRQPF QFTSTEFLTY STLR
101: QISILSNHLN GPRPCVCLFD CRNRIPRQPF QFTSTEFLTY STLR
001: MATESSESEE EGKISGGNYK LIIDDDLREM GKNAAWSVSS CKPGNGVTTL RDDNLETYWQ SDGLQPHLIN IQFQKKVKLQ LVVLYVDFKL DESYTPSKIS
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
101: IRAGDGFHNL KEIKSVELVK PTGWVCLSLS GTDPRETFVN TFMLQIAILS NHLNGRDTHI RQIKVYGPRP NPIPHQPFQF TSMEFLTYST LR
Arabidopsis Description
APC10Anaphase-promoting complex subunit 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.