Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53538 | Canola | mitochondrion | 88.03 | 81.7 |
| Bra005063.1-P | Field mustard | cytosol | 66.9 | 17.03 |
| CDX74867 | Canola | cytosol | 66.9 | 17.03 |
| CDY44628 | Canola | cytosol | 66.9 | 17.03 |
| AT2G39090.1 | Thale cress | cytosol | 63.38 | 16.13 |
| Solyc01g067490.2.1 | Tomato | cytosol | 58.45 | 14.79 |
| KRH21040 | Soybean | nucleus | 57.75 | 14.64 |
| KRH11210 | Soybean | cytosol | 57.75 | 14.64 |
| VIT_05s0020g01730.t01 | Wine grape | cytosol | 55.63 | 14.11 |
| GSMUA_Achr5P26960_001 | Banana | cytosol | 54.93 | 13.9 |
| Os05t0149900-01 | Rice | cytosol | 52.82 | 13.37 |
| HORVU1Hr1G021230.8 | Barley | cytosol | 50.7 | 12.97 |
| TraesCS1A01G090300.1 | Wheat | cytosol | 50.7 | 12.83 |
| TraesCS1B01G118300.2 | Wheat | cytosol | 50.7 | 12.83 |
| TraesCS1D01G098700.1 | Wheat | cytosol | 50.7 | 12.83 |
| Zm00001d024858_P004 | Maize | cytosol | 50.0 | 12.7 |
| KXG21309 | Sorghum | cytosol | 50.7 | 12.48 |
Protein Annotations
| EnsemblPlants:CDY06464 | EnsemblPlantsGene:GSBRNA2T00122529001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| PANTHER:PTHR12558 | PANTHER:PTHR12558:SF8 | PFscan:PS50005 | PFscan:PS50293 | ProteinID:CDY06464 | ProteinID:CDY06464.1 |
| SEG:seg | SUPFAM:SSF48452 | UniParc:UPI0004EB8650 | MapMan:35.1 | : | : |
Description
BnaC06g11800D
Coordinates
chrLK031970:-:395381..397071
Molecular Weight (calculated)
15950.9 Da
IEP (calculated)
6.970
GRAVY (calculated)
-0.206
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFTMQSEYQ TKRPEAAAIA FRAAQNLRYD LRSYQGLVNR LSTFLFGIWQ NQRSVVYLGA AIALADLHLM EGRNGDAVSL LERYLKDWAD ESLHAKLAQV
101: FAATNMLQDS LSHYQAALRI NPQNEAATAD GPKHIETTLS LF
101: FAATNMLQDS LSHYQAALRI NPQNEAATAD GPKHIETTLS LF
001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
Arabidopsis Description
APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.