CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68863
CDX75256
CDX83601
CDX89437
CDY03368
CDY23332
CDY30950
CDY51673

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27600.1	CDX89437	AT4G25200.1	21798944
AT4G27600.1	CDY03368	AT4G25200.1	21798944
AT4G27600.1	CDX68863	AT4G32570.1	21798944
AT4G27600.1	CDX75256	AT4G32570.1	21798944
AT4G27600.1	CDX83601	AT4G32570.1	21798944
AT4G27600.1	CDY23332	AT4G32570.1	21798944
AT4G27600.1	CDY30950	AT4G32570.1	21798944
AT4G27600.1	CDY51673	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026335.1-P	Field mustard	plastid	99.57	99.57
CDY56323	Canola	cytosol	74.13	89.74
VIT_16s0039g01580.t01	Wine grape	cytosol	63.91	80.33
CDY29847	Canola	plastid	75.65	76.32
AT4G27600.1	Thale cress	plastid	74.78	73.04
KRH29306	Soybean	plastid	61.52	63.45
Zm00001d047033_P001	Maize	plastid	18.91	61.27
KRH24012	Soybean	plastid	61.09	60.95
Zm00001d030048_P001	Maize	plastid	59.35	59.61
GSMUA_Achr11P...	Banana	plastid	61.3	59.49
EER94451	Sorghum	plastid	60.22	59.44
Zm00001d047032_P001	Maize	mitochondrion, plastid	22.39	59.2
Os10t0573000-01	Rice	mitochondrion	58.7	58.95
TraesCS1A01G191300.1	Wheat	mitochondrion	58.04	57.79
TraesCS1D01G195000.1	Wheat	mitochondrion, plastid	57.83	57.58
TraesCS1B01G206200.1	Wheat	mitochondrion, plastid	57.61	57.36
Solyc03g097210.2.1	Tomato	plastid	60.43	57.32
PGSC0003DMT400068057	Potato	plastid	61.09	56.77
HORVU0Hr1G000280.1	Barley	plastid	58.04	52.46
CDY29418	Canola	cytosol	16.52	21.35
CDY39367	Canola	cytosol	16.09	20.73

Protein Annotations

EnsemblPlants:CDX89233	EnsemblPlantsGene:GSBRNA2T00149424001	Gene3D:3.40.1190.20	GO:A0A078DPV2	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016773	InterPro:Carboh/pur_kinase_PfkB_CS	InterPro:IPR029056	InterPro:PfkB_dom	InterPro:Ribokinase-like
PANTHER:PTHR43085	PANTHER:PTHR43085:SF1	PFAM:PF00294	ProteinID:CDX89233	ProteinID:CDX89233.1	ScanProsite:PS00584
SEG:seg	SUPFAM:SSF53613	UniParc:UPI0004EF39C4	MapMan:35.2	:	:

Description

BnaA01g16600D

Coordinates

chrLK031858:+:357203..359840

Molecular Weight (calculated)

49110.9 Da

IEP (calculated)

4.974

GRAVY (calculated)

-0.072

Length

460 amino acids

Sequence
(BLAST)

001: MALSLLSPIP SSASLSAFPA PKNASFLSSI YSLYHPKGTL GSSRTATSFF GGFRGSARIE STAADKKRQM VSRNGEFDEG EIERIGGQDE DDEELIEGHD
101: DNSPSSPDRW DVLGLGQAMV DFSGVVDDDF LKKLGLEKGT RKLIDHEERG RVLQAMDGCS YKAAAGGSLS NTLVALARLG CRSISDRPLN VAMAGSIAGD
201: PLGSFYRTKL RRANVNFLSA PIMDGTTGTV IVLTTPDAQR TMLAYQGTSS VVNYDSCLAS LISKTNVFVV EGYLFELPDT IRTITKACEE AHRNGALVAV
301: TASDVSCIER HYDDFWDIVG NYADIIFANS DEARAFCHFS ADESPISATR YLSHFVPFVS VTDGINGSYI GVKGEAIYIP PSPCVPVDTC GAGDAYASGI
401: LYGILRGVTD LKGMGDLAAT IAATVVGQQG TRLRVQDAVR LARSHEFLIK SSGVRTDVGS

Best Arabidopsis Sequence Match ( AT4G27600.1 )
(BLAST)

001: MAFSLLSPIP TSASLFFTLS AITASNNASS SSLSRLYSLY HPKGTLRTRT ATSFFGASGN LRIVSMAENR QLVCRIGGGA GAELDDMDEG EIQRIGNEDE
101: DDDEFIQVHA NNSSAASPER WDVLGLGQAM VDFSGVVDDE FLKKLGLEKG TRKLINHEER GKLLQAMDGC SYKAAAGGSL SNTLVALARL GSQSICDRPL
201: NVAMAGSIGG DPLGSFYGTK LRRANVNFLS APIKDGTTGT VIVLTTPDAQ RTMLAYQGTS SVVNYDSCLA SLIAKTNVFV VEGYLFELPD TIRTITKACE
301: EAHRNGALVA VTASDVSCIE RHYDDFWDIV GNYADIVFAN SDEARAFCHF SAEESPISAT RYMSHFVPFV SVTDGINGSY IGVKGEAIYI PPSPCVPVDT
401: CGAGDAYASG ILYGILRGVS DLKGMGDMAA TIAATVVGQQ GTRLRVQDAV ELARSHAFRL NGSGVRTDVG S

Arabidopsis Description

NARA5AT4g27600/T29A15_90 [Source:UniProtKB/TrEMBL;Acc:Q940Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.