CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025751.1-P	Field mustard	cytosol	100.0	100.0
CDY39367	Canola	cytosol	99.16	98.88
AT1G19600.1	Thale cress	cytosol, peroxisome, plastid	90.45	90.7
KRH61143	Soybean	cytosol	72.75	73.16
VIT_06s0004g07610.t01	Wine grape	plastid	39.04	68.47
TraesCS4B01G054400.1	Wheat	cytosol	70.79	67.92
TraesCS4D01G054500.1	Wheat	cytosol	70.22	67.39
TraesCS4A01G260200.2	Wheat	cytosol	70.22	67.02
KRH05844	Soybean	cytosol	70.79	67.02
Zm00001d040183_P001	Maize	plastid	69.66	66.13
PGSC0003DMT400009476	Potato	cytosol	69.66	65.96
Os01t0105900-01	Rice	cytosol	69.94	65.7
Solyc04g080580.2.1	Tomato	cytosol	69.1	65.43
KRH15175	Soybean	endoplasmic reticulum	70.51	62.13
GSMUA_Achr2P22960_001	Banana	cytosol	12.92	61.33
KRH75060	Soybean	extracellular, mitochondrion	24.16	60.56
Zm00001d008406_P002	Maize	plastid	69.1	58.85
VIT_00s0380g00030.t01	Wine grape	cytosol	13.76	57.65
KXG32133	Sorghum	cytosol	68.82	54.57
KRH38835	Soybean	peroxisome	39.61	50.54
GSMUA_Achr3P01160_001	Banana	cytosol	68.54	46.74
HORVU4Hr1G009140.1	Barley	plastid	63.2	45.27
CDY56323	Canola	cytosol	20.79	19.47
CDY29847	Canola	plastid	21.63	16.89
CDX89233	Canola	plastid	21.35	16.52

Protein Annotations

EnsemblPlants:CDY29418	EnsemblPlantsGene:GSBRNA2T00043015001	Gene3D:3.40.1190.20	InterPro:IPR029056	InterPro:PfkB_dom	InterPro:Ribokinase-like
PANTHER:PTHR43320	PANTHER:PTHR43320:SF1	PFAM:PF00294	ProteinID:CDY29418	ProteinID:CDY29418.1	SEG:seg
SUPFAM:SSF53613	UniParc:UPI000253EE81	UniProt:A0A078GXU0	MapMan:35.2	:	:

Description

BnaA06g13780DBnaA06g13780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXU0]

Coordinates

chrLK032236:-:413567..415753

Molecular Weight (calculated)

37976.6 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.017

Length

356 amino acids

Sequence
(BLAST)

001: MVAEALPNSH EAPPVVLGLQ PAALIDNVAP VDWSLLDQIP GDRGGSIPVQ KDELEHILKE LDTHVTAAPL KKMAGGSVAN TVRGLSVGFG VATGIIGAYG
101: DDEQGQLFVS NMGFSGVSIS RLRKKKGSTG QCVCLVDDSG NRTMRPCLSS AVKIQADELS KDDFTGSKWL VLRYAVLNLE VIKAAIGFAK QEGLSVSLDL
201: ASFEMVRNYR SELRQLLESG NIDLCFANED EAAELLRGEE EAGPEAALEF LSRHCNWAVV TLGSKGCIAK HDKEVVQVPA IGETIATDAT GAGDLFASGF
301: LYGLIKGLPL EECCKMGSCS GGSVIRALGG EVTPENWQWM HKQLQLKSLP VPDIRN

Best Arabidopsis Sequence Match ( AT1G19600.1 )
(BLAST)

001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN

Arabidopsis Description

At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.