Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025751.1-P Field mustard cytosol 90.7 90.45
CDY29418 Canola cytosol 90.7 90.45
CDY39367 Canola cytosol 90.42 89.92
KRH61143 Soybean cytosol 72.96 73.16
KRH05844 Soybean cytosol 71.83 67.82
TraesCS4D01G054500.1 Wheat cytosol 70.14 67.12
TraesCS4B01G054400.1 Wheat cytosol 70.14 67.12
VIT_06s0004g07610.t01 Wine grape plastid 38.31 67.0
TraesCS4A01G260200.2 Wheat cytosol 70.14 66.76
Zm00001d040183_P001 Maize plastid 69.86 66.13
PGSC0003DMT400009476 Potato cytosol 69.3 65.43
Solyc04g080580.2.1 Tomato cytosol 69.3 65.43
Os01t0105900-01 Rice cytosol 69.58 65.17
KRH15175 Soybean endoplasmic reticulum 70.42 61.88
KRH75060 Soybean extracellular, mitochondrion 24.51 61.27
GSMUA_Achr2P22960_001 Banana cytosol 12.68 60.0
Zm00001d008406_P002 Maize plastid 69.3 58.85
VIT_00s0380g00030.t01 Wine grape cytosol 13.52 56.47
KXG32133 Sorghum cytosol 68.73 54.34
KRH38835 Soybean peroxisome 40.0 50.9
GSMUA_Achr3P01160_001 Banana cytosol 67.89 46.17
HORVU4Hr1G009140.1 Barley plastid 62.25 44.47
AT4G27600.1 Thale cress plastid 22.82 17.2
Protein Annotations
Gene3D:3.40.1190.20MapMan:35.2EntrezGene:838547UniProt:A0A178WA67ProteinID:AAF79436.1ProteinID:AAF98405.1
ProteinID:AEE29872.1EMBL:AK227761ArrayExpress:AT1G19600EnsemblPlantsGene:AT1G19600RefSeq:AT1G19600TAIR:AT1G19600
RefSeq:AT1G19600-TAIR-GEnsemblPlants:AT1G19600.1TAIR:AT1G19600.1Unigene:At.26831EMBL:BT004821GO:GO:0003674
GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016310
GO:GO:0016740InterPro:IPR029056RefSeq:NP_173390.1ProteinID:OAP15340.1PFAM:PF00294PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PANTHER:PTHR43320PANTHER:PTHR43320:SF1
InterPro:PfkB_domUniProt:Q9LN35InterPro:Ribokinase-likeSUPFAM:SSF53613UniParc:UPI000000C4A9:
Description
At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
Coordinates
chr1:+:6778887..6781222
Molecular Weight (calculated)
37844.6 Da
IEP (calculated)
5.120
GRAVY (calculated)
0.023
Length
355 amino acids
Sequence
(BLAST)
001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.