Factsheet for VIT_06s0004g07610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 4
mitochondrion 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0070g00740.t01	Wine grape	cytosol	26.6	80.6
VIT_00s0380g00030.t01	Wine grape	cytosol	32.02	76.47
KRH38835	Soybean	peroxisome	64.53	46.95
VIT_18s0001g12750.t01	Wine grape	cytosol	89.16	46.89
KRH75060	Soybean	extracellular, mitochondrion	29.06	41.55
KRH61143	Soybean	cytosol	68.97	39.55
Bra025751.1-P	Field mustard	cytosol	68.47	39.04
CDY29418	Canola	cytosol	68.47	39.04
CDY39367	Canola	cytosol	68.47	38.94
AT1G19600.1	Thale cress	cytosol, peroxisome, plastid	67.0	38.31
KRH05844	Soybean	cytosol	70.94	38.3
PGSC0003DMT400009476	Potato	cytosol	69.95	37.77
GSMUA_Achr2P22960_001	Banana	cytosol	13.79	37.33
Solyc04g080580.2.1	Tomato	cytosol	68.47	36.97
KRH15175	Soybean	endoplasmic reticulum	71.92	36.14
TraesCS4D01G054500.1	Wheat	cytosol	61.58	33.69
TraesCS4B01G054400.1	Wheat	cytosol	61.58	33.69
Zm00001d040183_P001	Maize	plastid	61.58	33.33
TraesCS4A01G260200.2	Wheat	cytosol	61.08	33.24
Os01t0105900-01	Rice	cytosol	61.58	32.98
Zm00001d008406_P002	Maize	plastid	61.08	29.67
KXG32133	Sorghum	cytosol	61.08	27.62
HORVU4Hr1G009140.1	Barley	plastid	61.58	25.15
GSMUA_Achr3P01160_001	Banana	cytosol	63.55	24.71
VIT_16s0039g01580.t01	Wine grape	cytosol	20.69	11.48

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.2	ProteinID:CBI15859	ProteinID:CBI15859.3	UniProt:D7SJN3	EMBL:FN594951
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0046983
InterPro:IPR029056	PFAM:PF00294	PANTHER:PTHR43320	PANTHER:PTHR43320:SF1	InterPro:PfkB_dom	InterPro:Ribokinase-like
SUPFAM:SSF53613	UniParc:UPI00015C7440	ArrayExpress:VIT_06s0004g07610	EnsemblPlantsGene:VIT_06s0004g07610	EnsemblPlants:VIT_06s0004g07610.t01	SEG:seg

Description

No Description!

Coordinates

chr6:+:8395474..8397559

Molecular Weight (calculated)

22451.4 Da

IEP (calculated)

6.729

GRAVY (calculated)

0.068

Length

203 amino acids

Sequence
(BLAST)

001: MGSSGVNFSA LRIKKGPTTQ CVCLVDALGN HTMRPCLSSV VKIQADELTK EDFKGVKWLV MRYGIYNLEV IHAVIQMAKE EGIFVSLDLT SFELVRNFRG
101: PLLKLLQSGD IDLCFANEDE TRELLRDDEN ASPEAALEFL AKHCQWAVVA LGYNRCLAKC GREMVRVPAI RKAKTTDAIR AGDLFAGGFL YGLVKGLSLE
201: ECC

Best Arabidopsis Sequence Match ( AT1G19600.1 )
(BLAST)

001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN

Arabidopsis Description

At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.