Factsheet for VIT_00s0380g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07610.t01	Wine grape	plastid	76.47	32.02
KRH38835	Soybean	peroxisome	63.53	19.35
VIT_18s0001g12750.t01	Wine grape	cytosol	81.18	17.88
KRH61143	Soybean	cytosol	60.0	14.41
KRH05844	Soybean	cytosol	62.35	14.1
PGSC0003DMT400009476	Potato	cytosol	61.18	13.83
Bra025751.1-P	Field mustard	cytosol	57.65	13.76
CDY29418	Canola	cytosol	57.65	13.76
CDY39367	Canola	cytosol	57.65	13.73
AT1G19600.1	Thale cress	cytosol, peroxisome, plastid	56.47	13.52
KRH15175	Soybean	endoplasmic reticulum	62.35	13.12
Solyc04g080580.2.1	Tomato	cytosol	57.65	13.03
Os01t0105900-01	Rice	cytosol	52.94	11.87
TraesCS4D01G054500.1	Wheat	cytosol	51.76	11.86
TraesCS4A01G260200.2	Wheat	cytosol	50.59	11.53
TraesCS4B01G054400.1	Wheat	cytosol	49.41	11.32
Zm00001d040183_P001	Maize	plastid	48.24	10.93
Zm00001d008406_P002	Maize	plastid	48.24	9.81
KXG32133	Sorghum	cytosol	48.24	9.13
GSMUA_Achr3P01160_001	Banana	cytosol	54.12	8.81
HORVU4Hr1G009140.1	Barley	plastid	48.24	8.25
VIT_16s0039g01580.t01	Wine grape	cytosol	20.0	4.64
KRH75060	Soybean	extracellular, mitochondrion	5.88	3.52
GSMUA_Achr2P22960_001	Banana	cytosol	1.18	1.33
VIT_09s0070g00740.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.1190.20	MapMan:35.2	ProteinID:CBI40985	ProteinID:CBI40985.3	UniProt:D7UE20	EMBL:FN596777
GO:GO:0003674	GO:GO:0003824	GO:GO:0004747	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009116
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0046835	InterPro:IPR029056	PANTHER:PTHR43320
PANTHER:PTHR43320:SF1	InterPro:Ribokinase-like	SUPFAM:SSF53613	UniParc:UPI0001BE557A	ArrayExpress:VIT_00s0380g00030	EnsemblPlantsGene:VIT_00s0380g00030
EnsemblPlants:VIT_00s0380g00030.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:26634979..26635780

Molecular Weight (calculated)

9553.3 Da

IEP (calculated)

4.449

GRAVY (calculated)

-0.100

Length

85 amino acids

Sequence
(BLAST)

1: MVRNFRGPLL ELLQSGDIDL CFANEDETRE LLRDDENASP EAALEFLAKH CQWAVVTLGS NRCLAKYGRE RWVAVATESS IVVTI

Best Arabidopsis Sequence Match ( AT1G19600.1 )
(BLAST)

001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN

Arabidopsis Description

At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.