Factsheet for GSMUA_Achr3P01160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P22960_001	Banana	cytosol	10.54	73.33
Os01t0105900-01	Rice	cytosol	51.15	70.45
Zm00001d040183_P001	Maize	plastid	50.19	69.87
TraesCS4D01G054500.1	Wheat	cytosol	49.62	69.81
TraesCS4A01G260200.2	Wheat	cytosol	49.81	69.71
TraesCS4B01G054400.1	Wheat	cytosol	49.43	69.54
Bra025751.1-P	Field mustard	cytosol	46.74	68.54
CDY29418	Canola	cytosol	46.74	68.54
CDY39367	Canola	cytosol	46.55	68.07
AT1G19600.1	Thale cress	cytosol, peroxisome, plastid	46.17	67.89
KRH61143	Soybean	cytosol	45.02	66.38
PGSC0003DMT400009476	Potato	cytosol	47.32	65.69
Solyc04g080580.2.1	Tomato	cytosol	46.74	64.89
VIT_09s0070g00740.t01	Wine grape	cytosol	8.24	64.18
KRH05844	Soybean	cytosol	45.98	63.83
VIT_06s0004g07610.t01	Wine grape	plastid	24.71	63.55
VIT_18s0001g12750.t01	Wine grape	cytosol	45.98	62.18
Zm00001d008406_P002	Maize	plastid	49.62	61.96
KRH15175	Soybean	endoplasmic reticulum	45.21	58.42
KXG32133	Sorghum	cytosol	49.81	57.91
VIT_00s0380g00030.t01	Wine grape	cytosol	8.81	54.12
KRH75060	Soybean	extracellular, mitochondrion	14.56	53.52
KRH38835	Soybean	peroxisome	25.29	47.31
HORVU4Hr1G009140.1	Barley	plastid	45.02	47.28
GSMUA_Achr11P...	Banana	plastid	16.67	18.35

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	Gene3D:3.40.1190.20	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr3G01160_001	EnsemblPlants:GSMUA_Achr3P01160_001	EnsemblPlants:GSMUA_Achr3T01160_001	InterPro:IPR029056	UniProt:M0SAT4	InterPro:NA-bd_OB-fold
PFAM:PF00164	PFAM:PF00294	ScanProsite:PS00055	PANTHER:PTHR43320	PANTHER:PTHR43320:SF1	InterPro:PfkB_dom
InterPro:Ribokinase-like	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	SUPFAM:SSF53613	TIGRFAMs:TIGR00982
UniParc:UPI000294BDE0	:	:	:	:	:

Description

40S ribosomal protein S23 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01160_001]

Coordinates

chr3:-:863883..869881

Molecular Weight (calculated)

56737.8 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.202

Length

522 amino acids

Sequence
(BLAST)

001: MGAEGELRRT LFPLHHPLCD SDGRNWPLPP AILGLQPAAL VDHVARVDWS LLDRIPGDRG GSQQVAAEDL NHILSEVKAH ILPFLNEIPP IIAIAGGSVA
101: NTIRGMAAGF GVSSGIIGAC GDDEQGRLFI NNMSFSGVDL SRLRMKNGST GQCACLVDAD GNRTMRPCLS SAVKLQADEL KREDLRGAKW LILRYAFINL
201: EQIKAAIRIA KQEGVSVSMD LASFEMVRDY RSHLIDLLES GSIDLCFANE DEAKELISRE PKVDPEAALC FLAKHCKWAV VTLGPRGCIA KHGNEVVRVP
301: AIGDTHAVDA TGAGDLFASG FLYGLVKGLC LEDCCKVGSC SGGAVVRALG GEVRPENWQW MYKQMQTEAR QGRGASDYDK MGKTRGMGAG RKLKTHRRRQ
401: RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NFIEENDEVL IAGFGRKGHA VGDIPGVRFK
501: VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT1G19600.1 )
(BLAST)

001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN

Arabidopsis Description

At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.