CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05844	Soybean	cytosol	81.07	76.33
AT1G19600.1	Thale cress	cytosol, peroxisome, plastid	73.16	72.96
Bra025751.1-P	Field mustard	cytosol	73.16	72.75
CDY29418	Canola	cytosol	73.16	72.75
CDY39367	Canola	cytosol	72.88	72.27
KRH15175	Soybean	endoplasmic reticulum	80.79	70.79
KRH75060	Soybean	extracellular, mitochondrion	27.97	69.72
VIT_06s0004g07610.t01	Wine grape	plastid	39.55	68.97
Solyc04g080580.2.1	Tomato	cytosol	72.88	68.62
PGSC0003DMT400009476	Potato	cytosol	72.32	68.09
Os01t0105900-01	Rice	cytosol	70.34	65.7
TraesCS4B01G054400.1	Wheat	cytosol	68.36	65.23
TraesCS4A01G260200.2	Wheat	cytosol	68.36	64.88
TraesCS4D01G054500.1	Wheat	cytosol	67.8	64.69
Zm00001d040183_P001	Maize	plastid	67.8	64.0
GSMUA_Achr2P22960_001	Banana	cytosol	12.71	60.0
VIT_00s0380g00030.t01	Wine grape	cytosol	14.41	60.0
Zm00001d008406_P002	Maize	plastid	68.36	57.89
KRH38835	Soybean	peroxisome	44.63	56.63
KXG32133	Sorghum	cytosol	67.8	53.45
GSMUA_Achr3P01160_001	Banana	cytosol	66.38	45.02
HORVU4Hr1G009140.1	Barley	plastid	60.45	43.06
KRH29306	Soybean	plastid	23.73	18.83
KRH24012	Soybean	plastid	23.45	18.0

Protein Annotations

EMBL:ACUP02002158	EMBL:BT099429	EnsemblPlants:KRH61143	EnsemblPlantsGene:GLYMA_04G030600	EntrezGene:100816993	Gene3D:3.40.1190.20
InterPro:IPR029056	InterPro:PfkB_dom	InterPro:Ribokinase-like	PANTHER:PTHR43320	PANTHER:PTHR43320:SF1	PFAM:PF00294
ProteinID:KRH61143	ProteinID:KRH61143.1	SUPFAM:SSF53613	UniParc:UPI0001B17114	UniProt:C6TNU7	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:-:2489501..2492469

Molecular Weight (calculated)

38403.4 Da

IEP (calculated)

5.881

GRAVY (calculated)

-0.018

Length

354 amino acids

Sequence
(BLAST)

001: MGAERFSHDH APLILGLQPS ALVDNVATVD WSLLHRIPGE RGGSIPVQIE ELESILREVK SKSHDDIKTL AGGSVANTIR GLSRGFGIST GIIGAYGDDH
101: QGQLFLTNMT FNSVDLSRLR QKKGHTAQCV CLVDDMGNRT MRPCLSNAVK VQAQELVKED FKGSKWLVLR YAVLNLEVIQ AAIHLAKQEG LLVSLDLASF
201: EMVRNFKLPL LKLLESGNID LCFANEDEAA ELLRDEQKDD PIAAVEFLSK YCQWAVVTLG ANGCIAKHGK EMIQVPAIGE TKATDATGAG DLFASGFLYG
301: VVKGLSLEEC CKVGTCSGGS VIRSLGGEVT LENWQWMYKQ MQINGLPTPS GLCK

Best Arabidopsis Sequence Match ( AT1G19600.1 )
(BLAST)

001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN

Arabidopsis Description

At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.