Factsheet for VIT_18s0001g12750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07610.t01	Wine grape	plastid	46.89	89.16
VIT_09s0070g00740.t01	Wine grape	cytosol	15.03	86.57
VIT_00s0380g00030.t01	Wine grape	cytosol	17.88	81.18
PGSC0003DMT400009476	Potato	cytosol	66.32	68.09
Solyc04g080580.2.1	Tomato	cytosol	65.8	67.55
TraesCS4B01G054400.1	Wheat	cytosol	62.95	65.5
TraesCS4D01G054500.1	Wheat	cytosol	62.69	65.23
Os01t0105900-01	Rice	cytosol	63.99	65.17
TraesCS4A01G260200.2	Wheat	cytosol	62.44	64.61
Zm00001d040183_P001	Maize	plastid	62.44	64.27
GSMUA_Achr2P22960_001	Banana	cytosol	11.4	58.67
Zm00001d008406_P002	Maize	plastid	62.95	58.13
KXG32133	Sorghum	cytosol	62.44	53.67
GSMUA_Achr3P01160_001	Banana	cytosol	62.18	45.98
HORVU4Hr1G009140.1	Barley	plastid	55.44	43.06
VIT_16s0039g01580.t01	Wine grape	cytosol	19.69	20.77

Protein Annotations

EntrezGene:100252232	wikigene:100252232	Gene3D:3.40.1190.20	MapMan:35.2	ProteinID:CCB45960	ProteinID:CCB45960.1
UniProt:F6H058	EMBL:FN595227	InterPro:IPR029056	EntrezGene:LOC100252232	wikigene:LOC100252232	PFAM:PF00294
PANTHER:PTHR43320	PANTHER:PTHR43320:SF1	InterPro:PfkB_dom	InterPro:Ribokinase-like	SUPFAM:SSF53613	TIGR:TC56455
UniParc:UPI00015C7C76	ArrayExpress:VIT_18s0001g12750	EnsemblPlantsGene:VIT_18s0001g12750	EnsemblPlants:VIT_18s0001g12750.t01	unigene:Vvi.2101	RefSeq:XP_002281978
RefSeq:XP_002281978.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:10869741..10873490

Molecular Weight (calculated)

41264.0 Da

IEP (calculated)

6.610

GRAVY (calculated)

-0.068

Length

386 amino acids

Sequence
(BLAST)

001: MCSEERGGRQ AKKRRGEARM GAEPLLPKKT HTHTQPNSPL ILGLQPSALI DHVAKIDSSL LAQIPGERGG SIAVAIEDLE HILNEVKTHI LSSPPDPSPM
101: RTMAGGSVAN TIRGLSAGFG VNCGILGACG DDEQGGLFVS NMGSSGVNLS ALRIKKGPTA QCVCLVDALG NRTMRPCLSS AVKIQAEELT KEDFKGVKWL
201: VMRYGIYNLE VIHAAIRMAK QEGVFVSLDL ASFEMVRNFR GPLLELLQSG DIDLCFANED EARELLRDDE NASPEAALEF LAKHCQWAVV TLGSNGCLAK
301: CGREMVRVAA IGEAKATDAT GAGDLFAGGF LYGLVKGLSL EECCRVGTCS GGSVIRSLGG EVTPENWQWM YKQMQIKGLP VPGLRQ

Best Arabidopsis Sequence Match ( AT1G19600.1 )
(BLAST)

001: MVAEALPKCP EAPLVLGLQP AALIDNVAPV DWSLLDQIPG DRGGSIAVQK DELEHMLKEL DAHISVAPLK KMAGGSVTNT VRGLSVGFGV ATGIIGAYGD
101: DEQGQLFVSN MGFSGVSISR LRKKKGSTAQ CVCLVDDSGN RTMRPCLSSA VKIQADELSK EDFTGSKWLV LRYAVLNLQV IQAAIRFAKQ EGLSVSLDLA
201: SFEMVRNSKS ELRQLLESGN IDLCFANEDE AAELLRGEQE AGPEAALEFL GRHCRWAVVT LGSKGCIAKH DKEVVHISAI GETVATDATG AGDLFASGFL
301: YGLIKGLSLE ECCKVGSCSG GSVIRALGGE VTPENWQWMH KQLQLKGLPV PDIHN

Arabidopsis Description

At1g19600 [Source:UniProtKB/TrEMBL;Acc:Q9LN35]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.