Factsheet for VIT_16s0039g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g04950.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27600.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT4G27600.1	VIT_04s0008g04950.t01	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56323	Canola	cytosol	80.05	77.11
CDY29847	Canola	plastid	80.6	64.69
KRH29306	Soybean	plastid	78.69	64.57
Bra019040.1-P	Field mustard	plastid	80.6	64.55
CDX89233	Canola	plastid	80.33	63.91
Bra026335.1-P	Field mustard	plastid	80.05	63.7
AT4G27600.1	Thale cress	plastid	81.15	63.06
GSMUA_Achr11P...	Banana	plastid	81.42	62.87
Zm00001d047033_P001	Maize	plastid	24.32	62.68
KRH24012	Soybean	plastid	78.14	62.04
Zm00001d047032_P001	Maize	mitochondrion, plastid	28.96	60.92
PGSC0003DMT400068057	Potato	plastid	81.69	60.4
Solyc03g097210.2.1	Tomato	plastid	79.78	60.21
Os10t0573000-01	Rice	mitochondrion	73.5	58.73
Zm00001d030048_P001	Maize	plastid	72.95	58.3
EER94451	Sorghum	plastid	74.04	58.15
TraesCS1A01G191300.1	Wheat	mitochondrion	72.95	57.79
TraesCS1D01G195000.1	Wheat	mitochondrion, plastid	72.95	57.79
TraesCS1B01G206200.1	Wheat	mitochondrion, plastid	72.68	57.58
HORVU0Hr1G000280.1	Barley	plastid	72.95	52.46
VIT_06s0004g07610.t01	Wine grape	plastid	11.48	20.69
VIT_00s0380g00030.t01	Wine grape	cytosol	4.64	20.0
VIT_18s0001g12750.t01	Wine grape	cytosol	20.77	19.69
VIT_09s0070g00740.t01	Wine grape	cytosol	2.73	14.93

Protein Annotations

EntrezGene:100251027	wikigene:100251027	Gene3D:3.40.1190.20	MapMan:35.2	EMBL:AM423253	ProteinID:CAN82032
ProteinID:CAN82032.1	ProteinID:CBI26479	ProteinID:CBI26479.3	InterPro:Carboh/pur_kinase_PfkB_CS	UniProt:D7T7K8	EMBL:FN595750
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979
GO:GO:0016740	GO:GO:0016773	InterPro:IPR029056	EntrezGene:LOC100251027	wikigene:LOC100251027	PFAM:PF00294
ScanProsite:PS00584	PANTHER:PTHR43085	PANTHER:PTHR43085:SF1	InterPro:PfkB_dom	InterPro:Ribokinase-like	SUPFAM:SSF53613
TIGR:TC56219	TIGR:TC63640	UniParc:UPI00015C8DF5	ArrayExpress:VIT_16s0039g01580	EnsemblPlantsGene:VIT_16s0039g01580	EnsemblPlants:VIT_16s0039g01580.t01
unigene:Vvi.7219	RefSeq:XP_002271653	RefSeq:XP_002271653.1	:	:	:

Description

No Description!

Coordinates

chr16:-:1194033..1198419

Molecular Weight (calculated)

38846.0 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.001

Length

366 amino acids

Sequence
(BLAST)

001: MGASVVPERW DVLGLGQAMV DFSGMVDDEF LERLGLEKGT RKVVNHEERG RVLQAMDGCS YKAAAGGSLS NSLVALARLG GRSIGGPPLN VAMAGSIGSD
101: PLGSFYRTKL RRANVNFLSA PVKDGTTGTV IVLTTPDAQR TMLAYQGTSS TVDYDACLAS TISKTNILVV EGYLFELPDT IRTITKACRE AHRNGSLVAV
201: TASDVSCNER HYDDFWEIIG NYAGIVFANS EEARALCHFS SKESPASATR YLSHFVPLVS VTDGPRGSYI GIKGEAVYIP PSPCEPVDTC GAGDAYASGI
301: LYSFLRGVSD VKGMGTLAAK VAATVVRQQG TRLSVHDAVE LAESFAFHLN SSTIRSDIGS DHISSL

Best Arabidopsis Sequence Match ( AT4G27600.1 )
(BLAST)

001: MAFSLLSPIP TSASLFFTLS AITASNNASS SSLSRLYSLY HPKGTLRTRT ATSFFGASGN LRIVSMAENR QLVCRIGGGA GAELDDMDEG EIQRIGNEDE
101: DDDEFIQVHA NNSSAASPER WDVLGLGQAM VDFSGVVDDE FLKKLGLEKG TRKLINHEER GKLLQAMDGC SYKAAAGGSL SNTLVALARL GSQSICDRPL
201: NVAMAGSIGG DPLGSFYGTK LRRANVNFLS APIKDGTTGT VIVLTTPDAQ RTMLAYQGTS SVVNYDSCLA SLIAKTNVFV VEGYLFELPD TIRTITKACE
301: EAHRNGALVA VTASDVSCIE RHYDDFWDIV GNYADIVFAN SDEARAFCHF SAEESPISAT RYMSHFVPFV SVTDGINGSY IGVKGEAIYI PPSPCVPVDT
401: CGAGDAYASG ILYGILRGVS DLKGMGDMAA TIAATVVGQQ GTRLRVQDAV ELARSHAFRL NGSGVRTDVG S

Arabidopsis Description

NARA5AT4g27600/T29A15_90 [Source:UniProtKB/TrEMBL;Acc:Q940Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.