Factsheet for VIT_04s0008g04950.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g00690.t01
VIT_06s0004g05490.t01
VIT_07s0005g01100.t01
VIT_07s0151g00650.t01
VIT_12s0028g00830.t01
VIT_13s0139g00390.t01
VIT_13s0139g00410.t01
VIT_14s0108g00080.t01
VIT_16s0039g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32570.1	VIT_12s0028g00830.t01	AT2G30880.1	21798944
AT4G32570.1	VIT_16s0039g01880.t01	AT3G03000.1	21798944
AT4G32570.1	VIT_05s0020g00690.t01	AT3G06430.1	21798944
AT4G32570.1	VIT_14s0108g00080.t01	AT3G28715.1	21798944
AT4G32570.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944
AT4G32570.1	VIT_13s0139g00390.t01	AT4G36690.1	21798944
AT4G32570.1	VIT_13s0139g00410.t01	AT4G36690.1	21798944
AT4G32570.1	VIT_07s0151g00650.t01	AT5G48385.1	21798944
AT4G32570.1	VIT_06s0004g05490.t01	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52520	Soybean	cytosol, plastid	53.06	56.66
KRH61848	Soybean	cytosol, plastid	52.83	56.14
Solyc06g065650.2.1	Tomato	nucleus	53.97	55.74
PGSC0003DMT400067114	Potato	nucleus	53.51	55.27
KRH05071	Soybean	nucleus	41.5	48.28
AT4G32570.1	Thale cress	nucleus	35.15	42.94
CDY23332	Canola	nucleus	32.88	40.73
Bra040086.1-P	Field mustard	nucleus	32.88	40.62
CDY51673	Canola	nucleus	32.88	40.5
CDX68863	Canola	nucleus	31.07	39.83
Bra011357.1-P	Field mustard	nucleus	31.07	39.83
CDX75256	Canola	nucleus	31.07	39.71
GSMUA_Achr6P01670_001	Banana	cytosol	31.07	37.74
GSMUA_AchrUn_...	Banana	cytosol	26.98	36.39
GSMUA_Achr2P08320_001	Banana	nucleus	24.94	35.14
CDY30950	Canola	nucleus	17.69	33.33
CDX83601	Canola	mitochondrion	14.51	21.92

Protein Annotations

EntrezGene:100262779	wikigene:100262779	MapMan:15.5.45	ProteinID:CBI20993	ProteinID:CBI20993.3	UniProt:D7SUP4
EMBL:FN595231	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719	GO:GO:0009987	GO:GO:0031347
GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	EntrezGene:LOC100262779	wikigene:LOC100262779	PFAM:PF06200
PFscan:PS51320	PANTHER:PTHR33077	PANTHER:PTHR33077:SF8	SMART:SM00979	InterPro:Tify_dom	UniParc:UPI0001BE19AE
ArrayExpress:VIT_04s0008g04950	EnsemblPlantsGene:VIT_04s0008g04950	EnsemblPlants:VIT_04s0008g04950.t01	unigene:Vvi.14400	RefSeq:XP_002282416	RefSeq:XP_002282416.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:4436556..4443296

Molecular Weight (calculated)

45987.4 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.613

Length

441 amino acids

Sequence
(BLAST)

001: MAVMRMGHSK SIANNTGTAS GSGMNPIFHD FLGMSCASDS PVVFAPKTVG HGGDARRSEA SPSASASAGA SSGGGRGPIS TTSDLGSERQ AGDHFDGVPF
101: YGPKSDISGP EISNRLAGSK RSNSDSFMGS SRDGVPQIGP ESLESSHLMK ILRNGTGGDR PRRSSDEELF LGLQSLRPTS ASLILQPPTG SRTDVNLSKW
201: DRSVTMNVNP TVQYPLRAGQ FAPFLHQVPP NRFKDANSGN AGPSNLSQPA ADEGSRTGIK GSGILSSITA NASGSVSERN PSGLLPSGNR PKSRTHILEP
301: ESSTAPSRLG STSSSRQMTI FYGGQAHVFD DVHPNKADVI MALAGSNGGS WSTTYSPKST VKPVGESTPN GENETGMAGN SMFPREFRGR LSLTGNPSQG
401: YGSGDRILTL TGAPQGVNIP KDTRNPVKAA EPSTEEKRRE V

Best Arabidopsis Sequence Match ( AT4G32570.1 )
(BLAST)

001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T

Arabidopsis Description

TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.