Factsheet for VIT_13s0139g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
vacuole 2
extracellular 1
endoplasmic reticulum 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g01580.t01
VIT_05s0077g01180.t01
VIT_10s0003g00130.t01
VIT_13s0019g02260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	VIT_10s0003g00130.t01	AT1G28360.1	21798944
AT4G36690.1	VIT_13s0019g02260.t01	AT2G39760.1	21798944
AT4G36690.1	VIT_04s0023g01580.t01	AT3G50670.1	21798944
AT4G36690.1	VIT_05s0077g01180.t01	AT5G49400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0139g00410.t01	Wine grape	cytosol	30.77	70.59
CDY12868	Canola	mitochondrion	29.49	20.18
CDY67096	Canola	mitochondrion	29.49	18.62
CDX75589	Canola	mitochondrion	34.62	15.21
CDY40493	Canola	nucleus	25.0	13.88
HORVU5Hr1G090000.2	Barley	nucleus	32.69	12.85
GSMUA_Achr4P16510_001	Banana	nucleus	37.82	12.5
Bra027119.1-P	Field mustard	nucleus	37.18	11.81
CDY12869	Canola	nucleus	37.18	11.69
VIT_00s0561g00030.t01	Wine grape	cytosol, nucleus, plasma membrane	37.18	11.55
CDY40481	Canola	nucleus	35.9	10.85
AT1G60830.2	Thale cress	nucleus	7.69	10.81
EES08974	Sorghum	nucleus	36.54	10.46
VIT_04s0023g01450.t01	Wine grape	nucleus	37.82	10.44
TraesCS4D01G143400.3	Wheat	nucleus	36.54	10.38
HORVU4Hr1G029030.3	Barley	nucleus	36.54	10.36
AT1G60900.1	Thale cress	nucleus	39.1	10.36
Bra040973.1-P	Field mustard	nucleus	17.31	9.93
GSMUA_Achr4P11020_001	Banana	nucleus	36.54	9.9
TraesCSU01G068100.3	Wheat	nucleus	36.54	9.83
CDY55407	Canola	nucleus	7.05	9.82
CDY35472	Canola	nucleus	34.62	9.82
TraesCS4A01G171800.3	Wheat	nucleus	36.54	9.81
CDY46188	Canola	nucleus	37.18	9.76
Bra031477.1-P	Field mustard	nucleus	37.18	9.76
CDY24773	Canola	nucleus	34.62	9.75
Bra010569.1-P	Field mustard	nucleus	34.62	9.75
AT4G36690.1	Thale cress	nucleus	35.26	9.6
Bra040940.1-P	Field mustard	nucleus	33.97	9.43
CDY03767	Canola	nucleus	36.54	9.39
CDY66742	Canola	nucleus	33.97	9.35
TraesCS4B01G145600.4	Wheat	nucleus	33.97	9.31
TraesCS4D01G150000.4	Wheat	nucleus	33.97	9.25
TraesCS2B01G144600.1	Wheat	nucleus	9.62	9.2
TraesCS2A01G122400.1	Wheat	nucleus	9.62	9.2
KXG28995	Sorghum	nucleus	35.26	9.17
TraesCS4A01G165000.4	Wheat	nucleus	33.97	9.06
Os11t0636900-02	Rice	nucleus	33.33	9.06
CDY30313	Canola	nucleus	33.97	9.01
HORVU5Hr1G089980.2	Barley	nucleus, plastid	32.69	8.96
HORVU4Hr1G038850.14	Barley	nucleus	33.97	8.76
CDY40492	Canola	nucleus	8.33	8.67
KXG29128	Sorghum	nucleus	33.33	8.21
TraesCS5B01G041900.1	Wheat	nucleus	8.33	7.83
TraesCS5A01G366000.1	Wheat	nucleus	30.13	7.76
TraesCS5D01G375600.1	Wheat	nucleus	30.13	7.69
TraesCS5B01G368400.1	Wheat	nucleus	30.77	7.62
TraesCS5A01G040700.1	Wheat	cytosol	7.05	6.63
Bra010656.1-P	Field mustard	mitochondrion, plastid	9.62	5.93
CDY55589	Canola	mitochondrion	8.97	5.58
Bra031341.1-P	Field mustard	nucleus	8.97	5.58
TraesCS5D01G071700.1	Wheat	nucleus	5.13	4.65
TraesCS5B01G067400.1	Wheat	nucleus	5.13	4.28
VIT_05s0049g01490.t01	Wine grape	nucleus	19.23	3.06
TraesCS5D01G071600.1	Wheat	nucleus	3.21	2.67
VIT_00s0611g00010.t01	Wine grape	nucleus	14.74	0.36

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	ProteinID:CCB58678	ProteinID:CCB58678.1	UniProt:F6HVG5	EMBL:FN596255
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015079	GO:GO:0016020	GO:GO:0016021	GO:GO:0071805
InterPro:IPR012677	InterPro:K+_transporter	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF02705	PANTHER:PTHR30540	PANTHER:PTHR30540:SF6
TMHMM:TMhelix	UniParc:UPI0002109F29	ArrayExpress:VIT_13s0139g00390	EnsemblPlantsGene:VIT_13s0139g00390	EnsemblPlants:VIT_13s0139g00390.t01	:

Description

No Description!

Coordinates

chr13:-:20667384..20668028

Molecular Weight (calculated)

17232.9 Da

IEP (calculated)

5.518

GRAVY (calculated)

0.371

Length

156 amino acids

Sequence
(BLAST)

001: MTAIERNSAG PSDAVVSVYI DHEKKFALVE MRIVEEASNA MALGGILLCV TGSEAMFSDL GHFSYTAIQI TFAFLVYPAL ILAYMGQAPY LLIHRDTSYP
101: IIFLCFSSRN CEVAYAYNSD FCLCCGKSSN HQQNVLYNQP VSVIWMLPKS QGCSCL

Best Arabidopsis Sequence Match ( AT2G40540.1 )
(BLAST)

001: MDLNLGKCCG SRSSKKESWR SVLLLAYQSL GVVYGDLSIS PLYVFKSTFA EDIQHSETNE EIYGVMSFVF WTLTLVPLLK YVFIVLRADD NGEGGTFALY
101: SLICRHVKVS LLPNRQVSDE ALSTYKLEHP PEKNHDSCVK RYLEKHKWLH TALLLLVLLG TCMVIGDGLL TPAISVFSAV SGLELNMSKE HHQYAVIPIT
201: CFILVCLFSL QHFGTHRVGF VFAPIVLTWL LCISGIGLYN IIQWNPHIYK ALSPTYMFMF LRKTRVSGWM SLGGILLCIT GAEAMFADLG HFNYAAIQIA
301: FTFLVYPALI LAYMGQAAYL SRHHHSAHAI GFYVSVPKCL HWPVLAVAIL ASVVGSQAII SGTFSIINQS QSLGCFPRVK VIHTSDKMHG QIYIPEINWM
401: LMILCIAVTI GFRDVKHLGN ASGLAVMAVM LVTTCLTSLV IVLCWHKPPI LALAFLLFFG SIELLYFSAS LTKFREGAWL PILLSLIFMI IMFVWHYTTI
501: KKYEFDLQNK VSLEWLLALG PSLGISRVPG IGLVFTDLTS GIPANFSRFV TNLPAFHRVL VFVCVKSVPV PFVPPAERYL VGRVGPVDHR SYRCIVRYGY
601: RDVHQDVDSF ETELVSKLAD FIRYDWHKRT QQEDDNARSV QSNESSSESR LAVIGTVAYE IEDNLQPESV SIGFSTVESM EDVIQMAEPA PTATIRRVRF
701: AVEENSYEDE GSTSSAEADA ELRSELRDLL AAQEAGTAFI LGHSHVKAKQ GSSVMKRLAV NFGYNFLRRN CRGPDVALKV PPVSLLEVGM VYVV

Arabidopsis Description

POT2Potassium transporter [Source:UniProtKB/TrEMBL;Acc:A0A178VTZ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.