Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12868 | Canola | mitochondrion | 58.01 | 71.49 |
| CDY67096 | Canola | mitochondrion | 44.84 | 51.01 |
| VIT_13s0139g00410.t01 | Wine grape | cytosol | 12.1 | 50.0 |
| CDY12869 | Canola | nucleus | 66.19 | 37.5 |
| PGSC0003DMT400040069 | Potato | cytosol | 41.28 | 37.3 |
| CDX75589 | Canola | mitochondrion | 46.62 | 36.9 |
| HORVU5Hr1G090000.2 | Barley | nucleus | 50.89 | 36.02 |
| CDY55589 | Canola | mitochondrion | 32.03 | 35.86 |
| CDY40481 | Canola | nucleus | 65.12 | 35.47 |
| GSMUA_Achr4P16510_001 | Banana | nucleus | 57.3 | 34.11 |
| Bra040973.1-P | Field mustard | nucleus | 32.74 | 33.82 |
| CDY46188 | Canola | nucleus | 62.63 | 29.63 |
| Solyc02g085570.2.1 | Tomato | nucleus | 58.36 | 29.39 |
| AT1G60900.1 | Thale cress | nucleus | 61.57 | 29.37 |
| PGSC0003DMT400033041 | Potato | nucleus | 58.01 | 29.32 |
| Solyc02g062920.2.1 | Tomato | nucleus | 58.36 | 29.29 |
| EES08974 | Sorghum | nucleus | 56.23 | 28.99 |
| CDY35472 | Canola | nucleus | 56.58 | 28.91 |
| CDY24773 | Canola | nucleus | 56.58 | 28.7 |
| CDY03767 | Canola | nucleus | 61.57 | 28.5 |
| TraesCS4D01G143400.3 | Wheat | nucleus | 55.52 | 28.42 |
| HORVU4Hr1G029030.3 | Barley | nucleus | 55.52 | 28.36 |
| GSMUA_Achr4P11020_001 | Banana | nucleus | 58.01 | 28.3 |
| Solyc12g008750.1.1 | Tomato | nucleus | 59.79 | 27.68 |
| KRH64800 | Soybean | nucleus | 58.01 | 27.17 |
| PGSC0003DMT400000919 | Potato | nucleus | 58.36 | 27.11 |
| TraesCS4B01G145600.4 | Wheat | nucleus | 54.8 | 27.07 |
| Os11t0636900-02 | Rice | nucleus | 55.16 | 27.0 |
| TraesCS4D01G150000.4 | Wheat | nucleus | 54.8 | 26.88 |
| KRH56450 | Soybean | nucleus | 56.94 | 26.45 |
| TraesCS4A01G165000.4 | Wheat | nucleus | 54.8 | 26.32 |
| TraesCSU01G068100.3 | Wheat | nucleus | 53.74 | 26.03 |
| KXG28995 | Sorghum | nucleus | 55.52 | 26.0 |
| TraesCS4A01G171800.3 | Wheat | nucleus | 53.74 | 25.99 |
| CDY66742 | Canola | nucleus | 52.31 | 25.93 |
| CDY30313 | Canola | nucleus | 53.74 | 25.68 |
| HORVU4Hr1G038850.14 | Barley | nucleus | 55.16 | 25.62 |
| HORVU5Hr1G089980.2 | Barley | nucleus, plastid | 51.6 | 25.48 |
| VIT_13s0139g00390.t01 | Wine grape | plasma membrane | 13.88 | 25.0 |
| TraesCS5A01G366000.1 | Wheat | nucleus | 52.67 | 24.42 |
| TraesCS5D01G375600.1 | Wheat | nucleus | 51.25 | 23.57 |
| TraesCS5B01G368400.1 | Wheat | nucleus | 52.67 | 23.49 |
| KXG29128 | Sorghum | nucleus | 50.18 | 22.27 |
| Zm00001d007635_P004 | Maize | nucleus | 24.56 | 9.8 |
| TraesCS5A01G040700.1 | Wheat | cytosol | 4.98 | 8.43 |
| TraesCS2A01G122400.1 | Wheat | nucleus | 4.63 | 7.98 |
| TraesCS2B01G144600.1 | Wheat | nucleus | 4.63 | 7.98 |
| TraesCS5B01G041900.1 | Wheat | nucleus | 4.63 | 7.83 |
| CDX84685 | Canola | nucleus | 7.12 | 5.38 |
| TraesCS5D01G071700.1 | Wheat | nucleus | 2.85 | 4.65 |
| CDX79530 | Canola | nucleus | 19.93 | 4.65 |
| TraesCS5B01G067400.1 | Wheat | nucleus | 2.49 | 3.74 |
| TraesCS5D01G071600.1 | Wheat | nucleus | 2.49 | 3.74 |
| CDX84686 | Canola | nucleus | 8.9 | 2.79 |
| AT1G60830.2 | Thale cress | nucleus | 0.71 | 1.8 |
| CDY55407 | Canola | nucleus | 0.71 | 1.79 |
| CDY40492 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.4.1.2.11.2 | Gene3D:3.30.70.330 | GO:A0A078HUN8 | UniProt:A0A078HUN8 | EnsemblPlants:CDY40493 | ProteinID:CDY40493 |
| ProteinID:CDY40493.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00069764001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23139 |
| PANTHER:PTHR23139:SF80 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEFC29 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g14510DBnaC09g14510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUN8]
Coordinates
chrLK032472:-:233107..236176
Molecular Weight (calculated)
30161.7 Da
IEP (calculated)
6.933
GRAVY (calculated)
-0.352
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRNDSADYA WNQDGHLHSP LCRSCRLQPA VITCREDNSV LCYGCFQRNS RNCVTYNHPQ PDLNLDLHLQ LPGPSAGPGP SGGPGIQNKK NEQLGALPLL
101: PVQAMTQQAT RHARRVYVGG LPPTANKQSV ATFFSQVMSA VGGNTAGPGE AVVNVYINHE KNFAFVEMRT VEEASNAMAL DGIILDYAHL QGVPVKVKRP
201: TDYNPSLAAA LGPSQPNPNL NLAAVGFSSG STGGLEGPDR LFVGGIPYHL TEDQIRELLE SFGPLRGFNL VKDRETGNSM G
101: PVQAMTQQAT RHARRVYVGG LPPTANKQSV ATFFSQVMSA VGGNTAGPGE AVVNVYINHE KNFAFVEMRT VEEASNAMAL DGIILDYAHL QGVPVKVKRP
201: TDYNPSLAAA LGPSQPNPNL NLAAVGFSSG STGGLEGPDR LFVGGIPYHL TEDQIRELLE SFGPLRGFNL VKDRETGNSM G
001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED
Arabidopsis Description
U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.