Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79530 | Canola | nucleus | 20.85 | 15.53 |
| CDY55407 | Canola | nucleus | 1.56 | 12.5 |
| CDY67096 | Canola | mitochondrion | 3.01 | 10.93 |
| CDX75589 | Canola | mitochondrion | 4.12 | 10.42 |
| CDY12868 | Canola | mitochondrion | 2.56 | 10.09 |
| CDY40492 | Canola | nucleus | 1.56 | 9.33 |
| CDY30313 | Canola | nucleus | 5.91 | 9.01 |
| CDY40493 | Canola | nucleus | 2.79 | 8.9 |
| CDY03767 | Canola | nucleus | 6.02 | 8.9 |
| CDY46188 | Canola | nucleus | 5.8 | 8.75 |
| CDY35472 | Canola | nucleus | 5.35 | 8.73 |
| CDY40481 | Canola | nucleus | 5.02 | 8.72 |
| CDY24773 | Canola | nucleus | 5.24 | 8.48 |
| CDY12869 | Canola | nucleus | 4.68 | 8.47 |
| CDY66742 | Canola | nucleus | 5.35 | 8.47 |
| CDY55589 | Canola | mitochondrion | 2.01 | 7.17 |
| CDX84685 | Canola | nucleus | 2.79 | 6.72 |
Protein Annotations
| EnsemblPlants:CDX84686 | EnsemblPlantsGene:GSBRNA2T00141966001 | Gene3D:3.30.70.330 | GO:A0A078D5S7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| ncoils:Coil | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF56 | PFscan:PS50102 | ProteinID:CDX84686 | ProteinID:CDX84686.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE70E8 | MapMan:35.2 | : |
Description
BnaA03g15440D
Coordinates
chrLK031838:-:716455..721172
Molecular Weight (calculated)
101568.0 Da
IEP (calculated)
9.842
GRAVY (calculated)
-1.352
Length
897 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVSKEVDFK NIQQPKSAGA SSSSNPSLTR VKVDETLKRR RLSSPSARLF HLLLERMNEV SDQKEKPDGH EGSAARTRPT SVEEIMVRRK RKESLENLEA
101: AQLLGNDLVG KVSDYHESRK GDYDESKEVS REEGVENSLR KKEDAISDSR EERQDKSREE DSFGAVQLVG NNLVEKVSDY HESEKWNDRS EKPRHGELVN
201: DSSRNKEEAI SSSKDEKLDK EGTVGAATLL GNDLGEKVSD DHASEKGNDK SKKVRHEERG KDSSRKKEDA TSSSKNEGPD KPRKDDHVET AQLLGNDLVE
301: KVSDCRASDK ELEKSKKVSC ESVKDSSRKK EEATSRSREG RLDKPMKKDP VDKVSDYRAS GREHDRSKKL RPGERVKDSS KKKEDTISSA REEKSMKDDP
401: VGAAQLLSND LVEKVSDYHE SKKGYHRSEK LRREEDDKDR LRKKVDAISS CREEKLDKPT KEEEPAGHRK RKAEGEGSRA KEKIVEEHSK DRRIKKEETN
501: SSFREERPDK KMKKEDLAAN RKIRVEGEFP TTETKTRTDR DGPGSRKRLR SLVVADIPRN ENSTKPDSGN KRKNQNGDHM TNRERDVSRR HDPTKVHAVE
601: VSERSEKREQ PKSDRRDMRE RRRSRSRDHG GQERQKRSSP LPKAEKATSR HKRGHEDRSE NTVKDRAGKH HFNDNDNKSR RYSSSKSELG GYSPRKRRED
701: ASAKAASPSN LPSEKKVAKW DLPPTVTAGM FSNSGFSGLQ PATQTAYPTM SEVSLTLLKP QIEASFRTPP ARQTTSIDSV QLTESTRRMR RLYAENVPDS
801: ASEKSLIECF NGYMLSSGSN HIKGSEPCIS CIINKEKSQA LVEFLTPQDA SAALSLDGCS FAGSNLKIRR PKDYVETTGV YVGYVIFHIQ EADEAVC
101: AQLLGNDLVG KVSDYHESRK GDYDESKEVS REEGVENSLR KKEDAISDSR EERQDKSREE DSFGAVQLVG NNLVEKVSDY HESEKWNDRS EKPRHGELVN
201: DSSRNKEEAI SSSKDEKLDK EGTVGAATLL GNDLGEKVSD DHASEKGNDK SKKVRHEERG KDSSRKKEDA TSSSKNEGPD KPRKDDHVET AQLLGNDLVE
301: KVSDCRASDK ELEKSKKVSC ESVKDSSRKK EEATSRSREG RLDKPMKKDP VDKVSDYRAS GREHDRSKKL RPGERVKDSS KKKEDTISSA REEKSMKDDP
401: VGAAQLLSND LVEKVSDYHE SKKGYHRSEK LRREEDDKDR LRKKVDAISS CREEKLDKPT KEEEPAGHRK RKAEGEGSRA KEKIVEEHSK DRRIKKEETN
501: SSFREERPDK KMKKEDLAAN RKIRVEGEFP TTETKTRTDR DGPGSRKRLR SLVVADIPRN ENSTKPDSGN KRKNQNGDHM TNRERDVSRR HDPTKVHAVE
601: VSERSEKREQ PKSDRRDMRE RRRSRSRDHG GQERQKRSSP LPKAEKATSR HKRGHEDRSE NTVKDRAGKH HFNDNDNKSR RYSSSKSELG GYSPRKRRED
701: ASAKAASPSN LPSEKKVAKW DLPPTVTAGM FSNSGFSGLQ PATQTAYPTM SEVSLTLLKP QIEASFRTPP ARQTTSIDSV QLTESTRRMR RLYAENVPDS
801: ASEKSLIECF NGYMLSSGSN HIKGSEPCIS CIINKEKSQA LVEFLTPQDA SAALSLDGCS FAGSNLKIRR PKDYVETTGV YVGYVIFHIQ EADEAVC
0001: MNEVNKQKEN RDGHETLVNE EGSAARTRPT SVEEIRLRRK RKESLENVKE ETVGAAQLLG YDLVEKASDY HESKNLRREE HVEDSSRKEK EAISRCREEK
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
0101: IEKPMKEDPV GAAQLPDKNL VEKVLDCHES EKGYDRSEKL SHEELVMDSS RKKEEAISSS REEKLDKPIK DDLVGTAQLL GNDLVEKVPE YHVSEKEHDG
0201: SKNVRREERV KDSLRKKEDI TSSSRDETPM KEDHVGAAQL RGNDIVEKVS DNHASEKGHD KSNKVRREEH VKDSSRKKED YISSFREEKS RKEDHVGAAM
0301: LLGHDIVDKF SDYHASEKRH DRSKKVRRDE HVKESSRKKE DATSGSTEEK SMKEDHAGAA QLLGHDIVEK VSDYHASEKG HDRSTKVRRE ERVKDSSRKK
0401: EDATSGSREE RVDNSTKEDP VGAAQLLGND FVEKVSDYHT SERGHERSKK VRREERVKDN SRKKEEAISS SRGEKPIKED HVGAAQLLGN DLVEMVSDYH
0501: ETEKGYDRSK KLSREERVKD SSRKKEEAIS SSREENLDKQ KKDESTSNRK RKAEGECSTA ETESIEEHSK DRRGKKEETN SNCREERRDK KMKKEDLASN
0601: RKIEGEIPTT ETKTMTDRDG LCSKKRLRSL VVADVPRDES SIKPDNGDKR KNQNGNHKKN REINMSKRHD PGKVHSVEVS ERWERREQPK SRQRDLREKR
0701: RRSRSRDHGQ DRQKRSSPLP RAEKATSRHK RNHEERSENV VKDRSGKHHC NDNEDKVTST VSNKSRRYSA SKSELGGYSP RKRREQASTK AASPPNLSSE
0801: KKSAKWGLAA TVTAGMFSDS VFSGLQAATQ TAYPTISEAS LTLLKPLMVM DAPFRTPPAR QTTSFDSVQL TESTRRMRRL YAENVPDSAS EKSLIECFNG
0901: YMLSSGSNHI KGSEPCISCI INKEKSQALV EFLTPQDASA ALSLDGCSFA GSNLKIRRPK DYVRTTNGEL EKKEPAANAV SDNVEDSSNK IFIGGFSKAI
1001: SSEMLMEIVS VFGPLKAYRF VSNNDLNQRC AFLEYTDGSV TLKACAGLNG MRLGGSVITA VCAFPDASSV AVNENPPFYG IPSHAKPLLG KPKNILKLKN
1101: VVDPEDLTSF SEQEVKEILE DVRLECARFG VIKSINILEH KSKDITVSET NPLLNLESTD SKEMNVSVIE EKDEGSEKAE DIADNVDLAE VVMPDSLTGE
1201: DKLCEPCSDT AAETSTQENE DLHSTEQEHC EKIVEESAQA EAENPQEVAS VRTVKTRWDA GDKIEEEQEE DPEDVFETGC IFIEYRRPEA TCDAAHSLHG
1301: RLYDNRIVKA EYVSKELYQI RFPSG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT2G33435]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.