CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81371
CDX85408
CDX86235
CDX90145
CDX91612
CDX93236
CDX93238
CDX94610
CDY05631
CDY07031
CDY07638
CDY15674
CDY27099
CDY30756
CDY30806
CDY33903
CDY34107
CDY35734
CDY53849
CDY57127
CDY61778

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36690.1	CDX90145	AT1G28360.1	21798944
AT4G36690.1	CDX94610	AT1G28360.1	21798944
AT4G36690.1	CDY15674	AT1G28360.1	21798944
AT4G36690.1	CDY30806	AT1G28360.1	21798944
AT4G36690.1	CDY34107	AT1G28360.1	21798944
AT4G36690.1	CDY35734	AT1G28360.1	21798944
AT4G36690.1	CDX93236	AT2G39760.1	21798944
AT4G36690.1	CDX93238	AT2G39760.1	21798944
AT4G36690.1	CDY07031	AT2G39760.1	21798944
AT4G36690.1	CDY07638	AT2G39760.1	21798944
AT4G36690.1	CDY61778	AT2G39760.1	21798944
AT4G36690.1	CDX81371	AT3G50670.1	21798944
AT4G36690.1	CDY30756	AT3G50670.1	21798944
AT4G36690.1	CDY53849	AT3G50670.1	21798944
AT4G36690.1	CDY57127	AT3G50670.1	21798944
AT4G36690.1	CDX85408	AT5G49400.1	21798944
AT4G36690.1	CDX86235	AT5G49400.1	21798944
AT4G36690.1	CDY05631	AT5G49400.1	21798944
AT4G36690.1	CDY33903	AT5G49400.1	21798944
AT4G36690.1	CDX91612	AT5G51910.1	21798944
AT4G36690.1	CDY27099	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12868	Canola	mitochondrion	62.75	67.98
CDX75589	Canola	mitochondrion	86.64	60.28
PGSC0003DMT400040069	Potato	cytosol	71.66	56.91
VIT_13s0139g00410.t01	Wine grape	cytosol	14.17	51.47
HORVU5Hr1G090000.2	Barley	nucleus	74.9	46.6
CDY40493	Canola	nucleus	51.01	44.84
GSMUA_Achr4P16510_001	Banana	nucleus	82.19	43.01
CDY35472	Canola	nucleus	89.88	40.36
CDY24773	Canola	nucleus	90.28	40.25
CDY55589	Canola	mitochondrion	40.49	39.84
CDY12869	Canola	nucleus	76.52	38.1
AT4G36690.1	Thale cress	nucleus	87.45	37.7
CDY40481	Canola	nucleus	75.71	36.24
PGSC0003DMT400033041	Potato	nucleus	81.38	36.15
Solyc02g085570.2.1	Tomato	nucleus	80.97	35.84
Solyc02g062920.2.1	Tomato	nucleus	80.16	35.36
TraesCS4D01G143400.3	Wheat	nucleus	78.54	35.34
HORVU4Hr1G029030.3	Barley	nucleus	78.54	35.27
GSMUA_Achr4P11020_001	Banana	nucleus	81.78	35.07
EES08974	Sorghum	nucleus	76.52	34.68
CDY66742	Canola	nucleus	78.95	34.39
TraesCS4B01G145600.4	Wheat	nucleus	78.54	34.09
TraesCS4D01G150000.4	Wheat	nucleus	78.54	33.86
CDY30313	Canola	nucleus	79.76	33.5
TraesCSU01G068100.3	Wheat	nucleus	78.54	33.45
TraesCS4A01G171800.3	Wheat	nucleus	78.54	33.39
TraesCS4A01G165000.4	Wheat	nucleus	78.54	33.16
Os11t0636900-02	Rice	nucleus	76.92	33.1
CDY46188	Canola	nucleus	78.95	32.83
KRH56450	Soybean	nucleus	80.16	32.73
KRH64800	Soybean	nucleus	79.35	32.67
HORVU5Hr1G089980.2	Barley	nucleus, plastid	74.49	32.34
CDY03767	Canola	nucleus	78.54	31.96
PGSC0003DMT400000919	Potato	nucleus	77.73	31.74
HORVU4Hr1G038850.14	Barley	nucleus	77.33	31.57
KXG28995	Sorghum	nucleus	76.52	31.5
Solyc12g008750.1.1	Tomato	nucleus	76.52	31.14
TraesCS5A01G366000.1	Wheat	nucleus	72.47	29.54
VIT_13s0139g00390.t01	Wine grape	plasma membrane	18.62	29.49
TraesCS5D01G375600.1	Wheat	nucleus	72.47	29.3
TraesCS5B01G368400.1	Wheat	nucleus	71.66	28.1
CDY55407	Canola	nucleus	12.55	27.68
KXG29128	Sorghum	nucleus	70.45	27.49
CDY40492	Canola	nucleus	15.38	25.33
TraesCS5B01G041900.1	Wheat	nucleus	14.17	21.08
TraesCS5A01G040700.1	Wheat	cytosol	13.77	20.48
TraesCS2B01G144600.1	Wheat	nucleus	12.96	19.63
TraesCS2A01G122400.1	Wheat	nucleus	12.96	19.63
TraesCS5D01G071600.1	Wheat	nucleus	10.93	14.44
TraesCS5D01G071700.1	Wheat	nucleus	9.72	13.95
TraesCS5B01G067400.1	Wheat	nucleus	10.12	13.37
Zm00001d007635_P004	Maize	nucleus	24.29	8.52
CDX84685	Canola	nucleus	10.53	6.99
CDX79530	Canola	nucleus	22.27	4.57
CDX84686	Canola	nucleus	10.93	3.01

Protein Annotations

MapMan:16.4.1.2.11.2	Gene3D:3.30.70.330	GO:A0A078JMT9	UniProt:A0A078JMT9	EnsemblPlants:CDY67096	ProteinID:CDY67096
ProteinID:CDY67096.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00058818001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23139
PANTHER:PTHR23139:SF80	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEC703

Description

BnaCnng53510DBnaCnng53510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMT9]

Coordinates

chrLK035750:+:2210..3761

Molecular Weight (calculated)

26660.7 Da

IEP (calculated)

5.658

GRAVY (calculated)

-0.135

Length

247 amino acids

Sequence
(BLAST)

001: MMPIQAMTQQ ATRHARRVFS GYFFSQVMAA VGGNTAGPGD AVVNVYINHE KKFAFVEMRS VEEASDAMSL DEIIFEGAPV KVRRPSDYNP SLAASLGPSH
101: PSPHLNLAAV GLTPGASGGL EGPDRIFVGG LPYYCTELQA RELLESFGAL KGFDLVKDRE TGNFKGYAFC VYQDVAVTDI ACAALNGIKM GDKTLTIYVH
201: VQVFLKYGDT DGSSRARSGM NGRKFGGNEV VAVFYPEEKF DQGEYGA

Best Arabidopsis Sequence Match ( AT1G60900.1 )
(BLAST)

001: MMSYEGNGDG VAISTENHNE NYISLESSPF HEDSKSRESH DLKKDSSKIS EKDNENGRDK DGNKDRDREK DRDREKSRDR DREKSRDRDR DRERSKDRQR
101: DRHHRDRHRD RSRERSEKRD DLDDDHHRRS RDRDRRRSRD RDREVRHRRR SRSRSRSRSE RRSRSEHRHK SEHRSRSRSR SRSKSKRRSG FDMAPPDMLA
201: ATAVAAAGQV PSVPTTATIP GMFSNMFPMV PGQQLGALPV LPVQAMTQQA TRHARRVYVG GLPPTANEQS VSTFFSQVMS AIGGNTAGPG DAVVNVYINH
301: EKKFAFVEMR SVEEASNAMA LDGIILEGVP VKVRRPTDYN PSLAATLGPS QPNPNLNLGA VGLSSGSTGG LEGPDRIFVG GLPYYFTEVQ IRELLESFGP
401: LRGFNLVKDR ETGNSKGYAF CVYQDPSVTD IACAALNGIK MGDKTLTVRR AIQGAIQPKP EQEEVLLYAQ QQIALQRLMF QPGGTPTKIV CLTQVVTADD
501: LRDDEEYAEI MEDMRQEGGK FGNLVNVVIP RPNPDHDPTP GVGKVFLEYA DVDGSSKARS GMNGRKFGGN QVVAVYYPED KYAQGDYED

Arabidopsis Description

U2AF65BSplicing factor U2af large subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q8L716]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.